Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 6.8e-309 1063.1 537 100.0
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 2.4e-245 852.0 539 80.3
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.0e-243 846.7 542 79.2
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.8e-237 825.9 543 78.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 4.5e-236 821.2 545 77.4
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.9e-236 820.8 530 79.2
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 5.0e-235 817.8 535 77.6
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.1e-234 816.6 530 78.7
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 5.5e-234 814.3 542 76.9
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.2e-233 813.1 535 76.6
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 3.6e-233 811.6 536 75.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 4.7e-233 811.2 525 78.1
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 3.0e-232 808.5 534 77.5
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 2.0e-231 805.8 535 76.3
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 2.8e-230 802.0 534 77.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 6.3e-230 800.8 537 74.9
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 8.3e-230 800.4 530 75.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.4e-229 799.7 550 74.5
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.2e-228 796.6 529 76.0
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.5e-228 795.0 541 74.9
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 5.9e-228 794.3 537 74.9
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.3e-227 793.1 537 74.7
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.7e-227 792.7 535 75.3
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.7e-227 792.7 592 70.1
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 6.6e-227 790.8 530 75.5
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.3e-226 788.5 536 73.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 4.2e-226 788.1 519 77.6
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.2e-225 786.6 526 74.9
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.8e-225 785.4 524 75.8
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.1e-225 784.3 527 75.5
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 8.0e-225 783.9 533 75.0
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.8e-224 782.7 530 74.3
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.8e-224 782.7 532 74.4
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 2.3e-224 782.3 526 74.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 3.0e-224 781.9 534 74.5
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 4.0e-224 781.6 530 74.9
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.0e-224 781.6 538 73.0
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 6.8e-224 780.8 530 74.2
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.4e-223 778.1 530 74.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 7.5e-223 777.3 543 74.0
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.3e-222 776.5 520 74.6
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.3e-222 776.5 540 73.1
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.3e-222 776.5 530 74.9
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.9e-222 775.4 538 73.0
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 2.9e-222 775.4 540 73.9
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.1e-221 773.5 526 74.0
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 7.0e-221 770.8 541 73.4
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.7e-220 768.8 531 72.5
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 2.7e-220 768.8 525 73.9
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 3.5e-220 768.5 532 75.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 3.5e-220 768.5 518 74.3
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.6e-220 768.1 536 71.3
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 2.3e-219 765.8 545 72.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 5.0e-219 764.6 527 73.2
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 4.7e-217 758.1 539 70.9
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 8.0e-217 757.3 541 70.8
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 8.0e-217 757.3 527 72.3
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.1e-216 755.4 541 70.4
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.1e-216 755.4 535 72.7
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 5.2e-216 754.6 540 70.9
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 6.8e-216 754.2 540 70.6
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 8.9e-216 753.8 540 70.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 8.9e-216 753.8 573 68.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.0e-215 752.7 525 72.2
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 2.6e-215 752.3 540 70.4
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 2.6e-215 752.3 540 70.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 3.4e-215 751.9 532 73.3
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.4e-215 751.9 532 72.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 4.4e-215 751.5 514 75.3
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.2e-214 749.2 527 71.9
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.2e-212 743.4 542 69.6
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 4.6e-212 741.5 540 69.6
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 6.0e-212 741.1 514 71.2
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.0e-211 738.8 490 76.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.0e-211 738.0 539 70.9
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.0e-211 738.0 518 73.0
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 8.6e-211 737.3 530 71.1
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.9e-210 736.1 537 69.1
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.4e-208 729.9 561 66.5
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.8e-207 723.8 476 75.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-206 723.4 487 75.6
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.9e-206 721.5 515 70.3
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.4e-205 719.9 514 71.0
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.9e-205 719.5 518 69.9
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 9.2e-205 717.2 552 67.8
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.3e-203 713.4 520 69.6
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 1.7e-203 713.0 489 73.0
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.3e-202 708.8 527 68.9
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.5e-202 707.2 527 69.3
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.0e-200 701.8 487 74.1
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 9.2e-197 690.6 535 65.8
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.8e-193 679.1 533 67.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 8.9e-192 674.1 530 66.2
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 2.4e-189 666.0 595 64.2
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 6.2e-185 651.4 553 62.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.2e-183 647.1 410 80.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.3e-177 627.1 525 62.5
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.3e-170 602.4 406 75.1
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.2e-166 589.7 407 71.3
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 5.3e-128 462.2 537 50.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.0e-127 460.3 539 49.0
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.0e-123 448.0 352 66.5
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.6e-119 434.1 546 43.8
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.1e-116 423.7 547 43.7
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.4e-115 421.0 523 45.9
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 7.5e-114 415.2 294 73.8
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.1e-112 409.5 291 70.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.7e-111 406.8 272 76.1
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.7e-110 404.1 571 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 6.4e-105 385.6 568 39.3
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.5e-103 379.8 259 74.9
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.1e-101 374.8 317 60.6
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 2.4e-88 330.5 424 44.1
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.1e-78 296.2 312 54.5
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.4e-75 288.1 181 77.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.1e-71 274.2 619 31.7
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.2e-65 254.2 221 62.4
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.7e-55 220.7 270 49.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.5e-55 220.3 162 70.4
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 3.0e-54 217.2 158 69.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 2.2e-49 201.1 705 27.2
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.9e-49 199.9 99 93.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 5.1e-46 189.9 174 56.9
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.9e-42 176.4 115 75.7
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.6e-36 158.3 126 67.5
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.2e-36 156.0 122 63.1
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.7e-29 133.3 97 66.0
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 9.1e-27 125.9 179 39.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.0e-25 122.5 83 75.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.9e-22 110.5 94 55.3
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.7e-20 105.1 98 53.1
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.2e-16 90.5 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.3e-09 68.9 150 32.0
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 2.5e-08 64.7 40 80.0
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 1.0e-06 59.3 191 29.8
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 3.0e-06 57.8 40 75.0


User provided reference genes

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