Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02712 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 9.9e-36 152.9 77 100.0
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 2.5e-26 121.7 61 100.0
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 3.7e-22 107.8 61 85.2
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 3.7e-22 107.8 61 85.2
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 6.3e-22 107.1 61 82.0
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.4e-21 105.9 61 83.6
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.8e-21 105.5 61 82.0
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 2.4e-21 105.1 61 83.6
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 3.1e-21 104.8 61 82.0
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 6.9e-21 103.6 61 80.3
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 6.9e-21 103.6 61 80.3
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 9.0e-21 103.2 61 82.0
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 9.0e-21 103.2 61 80.3
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 9.0e-21 103.2 61 82.0
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 9.0e-21 103.2 61 82.0
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 9.0e-21 103.2 61 82.0
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 1.2e-20 102.8 61 82.0
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 1.2e-20 102.8 61 80.3
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 2.0e-20 102.1 61 80.3
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 2.0e-20 102.1 61 80.3
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 2.6e-20 101.7 61 82.0
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 2.6e-20 101.7 61 82.0
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.4e-20 101.3 62 77.4
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 3.4e-20 101.3 61 80.3
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 3.4e-20 101.3 61 82.0
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.9e-20 100.5 61 80.3
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 5.9e-20 100.5 61 78.7
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 5.9e-20 100.5 61 77.0
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 7.6e-20 100.1 61 77.0
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 1.0e-19 99.8 61 78.7
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.0e-19 99.8 61 77.0
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.0e-19 99.8 61 78.7
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 1.3e-19 99.4 61 80.3
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 1.3e-19 99.4 61 75.4
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.3e-19 99.4 61 75.4
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.7e-19 99.0 61 77.0
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.7e-19 99.0 61 77.0
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 2.2e-19 98.6 61 75.4
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 2.2e-19 98.6 61 73.8
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.9e-19 98.2 61 77.0
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 2.9e-19 98.2 61 75.4
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.8e-19 97.8 61 75.4
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 3.8e-19 97.8 61 78.7
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 5.0e-19 97.4 61 78.7
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.0e-19 97.4 61 77.0
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 6.5e-19 97.1 61 75.4
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 8.5e-19 96.7 61 77.0
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 8.5e-19 96.7 61 72.1
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 8.5e-19 96.7 61 75.4
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 8.5e-19 96.7 61 77.0
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 8.5e-19 96.7 61 73.8
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 1.1e-18 96.3 61 70.5
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 1.1e-18 96.3 61 73.8
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 1.1e-18 96.3 61 73.8
Psat6g100040 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-18 96.3 61 75.4
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 1.4e-18 95.9 61 73.8
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 1.9e-18 95.5 61 72.1
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 1.9e-18 95.5 61 75.4
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 1.9e-18 95.5 61 73.8
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 2.5e-18 95.1 61 75.4
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 2.5e-18 95.1 61 73.8
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 3.2e-18 94.7 60 75.0
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 3.2e-18 94.7 61 72.1
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 4.2e-18 94.4 61 72.1
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 4.2e-18 94.4 61 75.4
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 4.2e-18 94.4 61 72.1
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 5.5e-18 94.0 61 73.8
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.5e-18 94.0 61 73.8
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 7.2e-18 93.6 61 72.1
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 7.2e-18 93.6 61 72.1
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 7.2e-18 93.6 61 72.1
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 9.3e-18 93.2 61 67.2
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 9.3e-18 93.2 61 73.8
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 9.3e-18 93.2 61 70.5
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 1.2e-17 92.8 61 73.8
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 1.6e-17 92.4 61 73.8
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 1.6e-17 92.4 61 70.5
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 2.1e-17 92.0 61 68.9
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 2.1e-17 92.0 61 68.9
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 2.1e-17 92.0 61 72.1
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 2.7e-17 91.7 61 72.1
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 2.7e-17 91.7 61 70.5
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 3.6e-17 91.3 57 78.9
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.6e-17 91.3 61 72.1
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 73.8
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 68.9
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 73.8
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 72.1
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 68.9
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 4.6e-17 90.9 61 68.9
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 70.5
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 68.9
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 65.6
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 68.9
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 68.9
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 6.1e-17 90.5 61 73.8
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 7.9e-17 90.1 61 67.2
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 7.9e-17 90.1 61 72.1
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 1.0e-16 89.7 61 65.6
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 1.0e-16 89.7 61 72.1
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.0e-16 89.7 81 58.0
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.3e-16 89.4 61 72.1
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 1.3e-16 89.4 61 72.1
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 1.3e-16 89.4 61 68.9
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.3e-16 89.4 61 68.9
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 1.8e-16 89.0 61 65.6
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 3.9e-16 87.8 61 67.2
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 3.9e-16 87.8 61 68.9
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 3.9e-16 87.8 61 65.6
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 5.1e-16 87.4 61 67.2
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 5.1e-16 87.4 61 70.5
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 5.1e-16 87.4 61 70.5
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.1e-16 87.4 61 70.5
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 8.7e-16 86.7 61 68.9
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 8.7e-16 86.7 61 68.9
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 8.7e-16 86.7 61 68.9
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 8.7e-16 86.7 61 68.9
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-15 86.3 61 67.2
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.1e-15 86.3 61 67.2
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 1.1e-15 86.3 61 65.6
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 1.5e-15 85.9 61 67.2
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 1.5e-15 85.9 61 68.9
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 3.3e-15 84.7 61 67.2
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 5.7e-15 84.0 61 67.2
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 7.4e-15 83.6 61 67.2
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 9.7e-15 83.2 61 65.6
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 2.8e-14 81.6 61 63.9
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 3.7e-14 81.3 61 65.6
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 1.1e-13 79.7 61 62.3
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 2.4e-13 78.6 61 62.3
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.4e-13 78.6 61 62.3
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.4e-13 78.6 61 62.3
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.4e-13 78.6 61 62.3
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.4e-13 78.6 61 62.3
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 5.3e-13 77.4 57 68.4
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 1.2e-12 76.3 61 60.7
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.2e-12 76.3 61 60.7
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 2.6e-12 75.1 61 59.0
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 1.4e-10 69.3 61 52.5
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 2.5e-10 68.6 61 54.1
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 9.4e-10 66.6 61 49.2
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 3.9e-08 61.2 61 49.2
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 1.3e-06 56.2 60 45.0


User provided reference genes

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