Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 6.5e-57 223.8 109 100.0
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 8.5e-41 170.2 110 78.2
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.2e-40 168.3 110 75.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 7.2e-40 167.2 109 76.1
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-39 166.4 108 76.9
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-39 166.4 108 76.9
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.2e-39 166.4 108 76.9
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 6.1e-39 164.1 110 75.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.1e-39 164.1 93 83.9
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 8.0e-39 163.7 110 75.5
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.8e-38 162.5 98 82.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.3e-38 162.2 109 72.5
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.0e-38 161.8 109 72.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.0e-38 161.8 88 84.1
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.0e-38 161.8 88 86.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.0e-38 161.4 109 71.6
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 5.2e-38 161.0 109 74.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 6.7e-38 160.6 93 84.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-37 159.8 109 72.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 5.7e-37 157.5 89 86.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 7.5e-37 157.1 87 82.8
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.5e-37 157.1 108 72.2
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 7.5e-37 157.1 104 74.0
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 7.5e-37 157.1 102 77.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 7.5e-37 157.1 88 83.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 9.7e-37 156.8 89 83.1
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 9.7e-37 156.8 93 79.6
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.3e-36 156.4 91 82.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-36 156.4 87 82.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.3e-36 156.4 87 82.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-36 156.4 87 82.8
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.7e-36 156.0 89 83.1
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.7e-36 156.0 87 82.8
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.2e-36 155.6 111 71.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.8e-36 155.2 87 81.6
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.8e-36 155.2 87 81.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 2.8e-36 155.2 87 81.6
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.8e-36 155.2 89 82.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.8e-36 155.2 89 82.0
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.7e-36 154.8 111 72.1
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 4.8e-36 154.5 87 81.6
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.8e-36 154.5 87 81.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 6.3e-36 154.1 87 80.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 6.3e-36 154.1 112 69.6
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 6.3e-36 154.1 105 71.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.3e-36 154.1 89 80.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 8.2e-36 153.7 108 70.4
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 8.2e-36 153.7 107 72.0
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.1e-35 153.3 89 79.8
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.1e-35 153.3 112 69.6
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-35 153.3 107 67.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-35 153.3 104 72.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-35 153.3 116 68.1
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.4e-35 152.9 92 79.3
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.4e-35 152.9 86 81.4
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-35 152.5 89 79.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.8e-35 152.5 87 81.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.8e-35 152.5 87 81.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.1e-35 151.8 88 84.1
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.3e-35 151.0 86 81.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.3e-35 151.0 86 81.4
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 5.3e-35 151.0 88 83.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.3e-35 151.0 109 67.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.3e-35 151.0 87 81.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.3e-35 151.0 87 81.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.0e-35 150.6 86 80.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.0e-35 150.6 88 79.5
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.0e-35 150.6 116 67.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.2e-34 149.8 87 80.5
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.2e-34 149.8 87 80.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.6e-34 149.4 109 66.1
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.6e-34 149.4 89 79.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.6e-34 149.4 110 66.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.7e-34 148.7 89 78.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.5e-34 148.3 89 77.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.5e-34 148.3 84 81.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.5e-34 148.3 86 79.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.5e-34 148.3 143 56.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.5e-34 148.3 156 53.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.5e-34 148.3 116 65.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.5e-34 147.9 103 69.9
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 7.7e-34 147.1 90 78.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.7e-34 147.1 87 79.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 7.7e-34 147.1 109 67.9
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.0e-33 146.7 89 78.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-33 146.4 114 64.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.7e-33 146.0 86 82.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.7e-33 146.0 93 72.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.2e-33 145.6 91 78.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.2e-33 145.6 89 76.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.9e-33 145.2 101 70.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.8e-33 144.8 89 76.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 6.5e-33 144.1 87 79.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 8.5e-33 143.7 85 78.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.1e-32 143.3 94 74.5
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-32 143.3 109 67.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-32 143.3 88 77.3
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.9e-32 142.5 85 77.6
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 98 73.5
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 109 67.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-32 142.5 87 78.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-32 142.5 88 80.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.9e-32 142.5 88 76.1
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.5e-32 142.1 85 77.6
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-32 142.1 109 66.1
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.5e-32 142.1 86 79.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.2e-32 141.7 84 77.4
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.2e-32 141.7 87 75.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.2e-32 141.7 113 69.0
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 9.4e-32 140.2 90 75.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.4e-32 140.2 86 77.9
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.1e-31 139.0 117 62.4
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.7e-31 137.9 89 71.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.0e-30 136.7 89 73.0
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.8e-30 136.0 86 76.7
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 5.2e-30 134.4 88 70.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-29 133.3 113 62.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.2e-29 133.3 145 51.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.7e-29 131.0 88 72.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.7e-28 129.4 88 71.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.8e-28 128.6 78 76.9
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.1e-27 125.2 89 65.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 7.0e-27 124.0 100 62.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 4.5e-26 121.3 108 56.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 4.5e-26 121.3 78 75.6
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.3e-25 119.8 91 63.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 6.5e-25 117.5 79 73.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-24 116.7 79 69.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.1e-24 116.7 113 58.4
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.3e-24 115.2 105 61.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.6e-23 112.8 78 69.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.1e-23 112.5 78 69.2
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.8e-23 112.1 65 81.5
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.6e-23 111.7 79 68.4
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 8.0e-23 110.5 68 76.5
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.2e-22 107.8 112 55.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.2e-21 106.7 63 85.7
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-21 106.3 87 65.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.2e-20 102.4 82 63.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.9e-20 101.3 60 78.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.3e-20 100.9 85 60.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.1e-19 100.1 63 73.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-17 93.2 77 59.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-17 93.2 77 59.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-17 92.8 74 63.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 6.6e-17 90.9 96 52.1
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 8.6e-17 90.5 68 60.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.5e-16 89.7 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.6e-16 87.8 85 50.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.8e-15 85.5 50 82.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.7e-15 84.7 51 78.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.8e-14 80.9 61 67.2
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.2e-13 80.1 63 61.9
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 7.5e-13 77.4 68 51.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.2e-12 75.9 55 63.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-10 69.7 46 71.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.5e-10 68.6 64 59.4
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 6.0e-10 67.8 72 50.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-09 66.6 50 70.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.3e-09 66.6 60 55.0
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 3.6e-07 58.5 105 34.3
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.3e-06 55.8 65 41.5
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.1e-06 55.5 43 62.8


User provided reference genes

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