Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.1e-79 298.9 145 100.0
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.3e-68 263.1 142 85.2
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.1e-67 258.1 142 83.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 5.4e-67 257.7 142 82.4
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.2e-66 256.5 142 81.7
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 3.5e-66 255.0 143 81.1
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 4.6e-66 254.6 142 81.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.6e-66 254.6 142 81.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 4.6e-66 254.6 142 81.7
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 7.8e-66 253.8 142 81.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 7.8e-66 253.8 140 82.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 7.8e-66 253.8 143 83.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.0e-65 253.4 142 81.7
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.3e-65 252.3 142 82.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.0e-65 251.9 142 81.0
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 3.9e-65 251.5 142 81.7
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.9e-65 251.5 142 79.6
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 5.0e-65 251.1 142 81.7
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.1e-64 250.0 141 79.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.5e-64 249.6 142 79.6
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.5e-64 248.8 142 80.3
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.3e-64 248.4 142 78.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 4.3e-64 248.1 143 79.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 9.5e-64 246.9 142 78.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 9.5e-64 246.9 142 78.9
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-63 246.5 142 79.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.2e-63 246.5 141 79.4
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-63 246.1 142 78.2
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.6e-63 246.1 142 78.2
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.1e-63 245.7 142 80.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 6.2e-63 244.2 141 78.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 8.1e-63 243.8 141 77.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.1e-63 243.8 164 70.7
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 8.1e-63 243.8 153 75.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.8e-62 242.7 149 75.2
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.3e-62 242.3 145 77.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.3e-62 242.3 142 78.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 3.1e-62 241.9 142 79.6
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.1e-62 241.9 142 77.5
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.1e-62 241.9 142 77.5
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.0e-62 241.5 141 77.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 5.2e-62 241.1 141 76.6
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 6.8e-62 240.7 142 74.6
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 6.8e-62 240.7 142 74.6
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.2e-61 240.0 142 78.2
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.5e-61 239.6 141 75.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.0e-61 239.2 139 78.4
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.0e-61 239.2 142 78.2
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 2.6e-61 238.8 141 77.3
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.4e-61 238.4 141 77.3
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 4.4e-61 238.0 142 74.6
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 5.8e-61 237.7 141 77.3
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 9.9e-61 236.9 140 76.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.9e-61 236.9 142 76.1
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.3e-60 236.5 141 74.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-60 235.3 141 73.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-60 235.3 141 73.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.9e-60 235.3 141 74.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-60 235.3 141 73.8
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.7e-60 235.0 141 73.8
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.9e-60 234.6 141 73.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.4e-60 234.2 141 73.8
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.3e-60 233.8 141 73.0
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 8.3e-60 233.8 140 75.7
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-59 233.0 142 73.9
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-59 232.6 141 72.3
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.9e-59 232.6 141 75.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.4e-59 232.3 195 59.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.2e-59 231.9 137 75.9
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.1e-59 231.5 141 71.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.2e-59 230.3 140 72.9
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.2e-58 229.9 141 70.9
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.2e-58 229.9 133 79.7
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.6e-58 228.0 141 70.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 6.0e-58 227.6 140 72.1
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 7.8e-58 227.3 142 73.2
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.7e-57 226.1 142 69.7
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.3e-57 225.7 148 70.3
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.5e-56 222.2 196 58.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 4.3e-56 221.5 118 84.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.3e-56 220.7 140 69.3
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.6e-55 219.5 118 83.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.7e-55 218.0 120 81.7
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 8.1e-55 217.2 143 72.7
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.4e-54 216.5 142 71.8
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 3.1e-54 215.3 118 83.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.1e-54 215.3 141 67.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 6.8e-54 214.2 142 69.0
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.6e-53 212.2 191 56.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-53 212.2 141 65.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-53 212.2 141 65.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.8e-53 211.1 141 64.5
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 7.6e-53 210.7 142 65.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-52 209.5 141 63.1
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 6.4e-52 207.6 141 63.8
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.4e-52 207.6 141 64.5
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.4e-51 206.5 167 63.5
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 7.1e-51 204.1 138 67.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.5e-50 201.8 144 61.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 3.5e-50 201.8 141 63.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.5e-50 201.8 159 62.3
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.7e-49 199.5 130 70.0
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.0e-49 198.7 102 86.3
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 5.1e-49 198.0 118 73.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.5e-48 196.4 162 64.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-48 194.1 143 61.5
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 9.6e-48 193.7 103 82.5
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.6e-48 193.7 108 81.5
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.1e-47 192.6 102 81.4
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.1e-47 192.6 103 80.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 2.1e-47 192.6 140 60.0
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 3.6e-47 191.8 149 59.1
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.8e-46 189.5 139 57.6
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.4e-45 185.3 174 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 3.8e-44 181.8 140 55.0
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.4e-44 180.6 141 55.3
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.4e-44 180.6 141 54.6
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 8.4e-44 180.6 141 53.9
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-43 179.5 141 53.9
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 3.2e-43 178.7 136 57.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.4e-43 177.9 141 52.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-42 175.6 141 51.8
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.7e-42 175.6 141 51.8
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.7e-42 175.6 141 52.5
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 3.5e-42 175.3 141 51.8
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 3.5e-42 175.3 141 51.8
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.5e-42 175.3 136 54.4
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-40 169.9 141 50.4
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.5e-40 169.9 141 50.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.5e-40 169.1 141 50.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.3e-40 168.7 142 59.9
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.3e-40 168.3 141 51.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 9.6e-40 167.2 170 51.8
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-39 166.8 141 51.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 3.6e-39 165.2 86 84.9
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 6.2e-39 164.5 86 83.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.1e-38 163.7 142 59.2
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.5e-37 159.8 85 81.2
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-37 158.7 86 81.4
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 9.9e-37 157.1 117 55.6
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.2e-36 156.0 86 81.4
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 4.2e-35 151.8 124 53.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.7e-34 149.1 142 57.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.9e-33 145.2 85 71.8
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 9.6e-32 140.6 142 46.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.0e-29 132.9 64 93.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.8e-29 131.3 142 51.4
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 9.9e-29 130.6 94 69.1
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.2e-28 129.4 137 40.9
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 9.3e-27 124.0 150 40.7
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.2e-26 123.6 77 72.7
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.6e-26 123.2 68 79.4
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.6e-26 121.7 137 49.6
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 6.0e-26 121.3 65 83.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-24 115.9 70 71.4
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 9.6e-24 114.0 86 59.3
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-22 109.0 141 42.6
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 3.1e-22 109.0 68 66.2
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 6.0e-18 94.7 56 76.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.1e-17 91.7 58 69.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 6.9e-14 81.3 85 51.8
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-08 63.5 40 65.0
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.0e-08 63.2 37 70.3
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 5.7e-08 61.6 38 65.8
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 5.7e-08 61.6 38 65.8
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.7e-08 61.6 36 69.4
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-07 59.3 36 69.4


User provided reference genes

Program Settings