Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02553 Aquilegia oxysepala HOM05D002044 ORTHO05D005000 1.5e-49 199.1 93 100.0
arahy.Tifrunner.gnm1.ann1.2UYT9T Arachis hypogaea HOM05D002044 ORTHO05D005000 7.6e-14 80.5 54 70.4
Nn5g28996 Nelumbo nucifera HOM05D002044 ORTHO05D005000 1.3e-13 79.7 56 67.9
SGA_v2.0_scaffold51G18807 Striga asiatica HOM05D002044 ORTHO05D005000 1.7e-13 79.3 52 73.1
arahy.Tifrunner.gnm1.ann1.5QW7B0 Arachis hypogaea HOM05D002044 ORTHO05D005000 2.2e-13 79.0 54 68.5
COL.COLO4_22017 Corchorus olitorius HOM05D000394 ORTHO05D000299 2.2e-13 79.0 66 62.1
Duzib264G0515 Durio zibethinus HOM05D002044 ORTHO05D005000 2.9e-13 78.6 67 62.7
Gohir.A12G062700 Gossypium hirsutum HOM05D002044 ORTHO05D005888 3.8e-13 78.2 57 70.2
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 3.8e-13 78.2 57 70.2
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 3.8e-13 78.2 57 70.2
Gohir.A11G182100 Gossypium hirsutum HOM05D002044 ORTHO05D005000 4.9e-13 77.8 67 61.2
Sabra07G0017500 Salix brachista HOM05D002044 ORTHO05D005000 4.9e-13 77.8 67 59.7
vmacro12487 Vaccinium macrocarpon HOM05D002044 ORTHO05D426557 4.9e-13 77.8 65 55.4
Glyma.14G219400 Glycine max HOM05D002044 ORTHO05D005000 6.4e-13 77.4 62 64.5
Manes.01G139600 Manihot esculenta HOM05D002044 ORTHO05D005000 6.4e-13 77.4 58 65.5
Rhsim07G0203200 Rhododendron simsii HOM05D000657 ORTHO05D001476 6.4e-13 77.4 82 48.8
Ca_22334_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 8.4e-13 77.0 57 68.4
Ca_22338_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 8.4e-13 77.0 57 68.4
Migut.H02517 Erythranthe guttata HOM05D002044 ORTHO05D005000 8.4e-13 77.0 59 67.8
SGA_v2.0_scaffold12G06330 Striga asiatica HOM05D002044 ORTHO05D005000 1.1e-12 76.6 59 67.8
Atru.chr3.661 Acer truncatum HOM05D002044 ORTHO05D005000 1.4e-12 76.3 52 71.2
Atru.chr3.706 Acer truncatum HOM05D002044 ORTHO05D005000 1.4e-12 76.3 52 71.2
arahy.Tifrunner.gnm1.ann1.W01EMI Arachis hypogaea HOM05D002044 ORTHO05D005000 1.4e-12 76.3 54 72.2
Ca_22453_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 1.4e-12 76.3 57 68.4
THA.LOC104821302 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 1.4e-12 76.3 50 74.0
VMungo0251G3718 Vigna mungo HOM05D002044 ORTHO05D005000 1.4e-12 76.3 62 66.1
Prupe.6G150600 Prunus persica HOM05D002044 ORTHO05D005000 1.9e-12 75.9 67 61.2
PGR119G1800 Punica granatum HOM05D002044 ORTHO05D005000 3.2e-12 75.1 58 63.8
TPR.G21543 Trifolium pratense HOM05D002044 ORTHO05D005000 3.2e-12 75.1 52 75.0
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 3.2e-12 75.1 52 65.4
GSVIVG01023465001 Vitis vinifera HOM05D002044 ORTHO05D005000 3.2e-12 75.1 52 65.4
Haze_05175 Corylus avellana HOM05D002044 ORTHO05D005000 4.2e-12 74.7 59 66.1
PSO384G3579 Papaver somniferum HOM05D002044 ORTHO05D005000 4.2e-12 74.7 52 67.3
Psat4g095920 Pisum sativum HOM05D002044 ORTHO05D005000 4.2e-12 74.7 52 75.0
CSS0036707 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 5.4e-12 74.3 58 63.8
DCAR_018301 Daucus carota HOM05D002044 ORTHO05D005000 5.4e-12 74.3 57 68.4
PSO339G3999 Papaver somniferum HOM05D002044 ORTHO05D005000 5.4e-12 74.3 58 67.2
CANSAT01G0885 Cannabis sativa HOM05D002044 ORTHO05D005000 7.1e-12 73.9 46 78.3
CANSAT01G1521 Cannabis sativa HOM05D002044 ORTHO05D005000 7.1e-12 73.9 46 78.3
Lsat_1_v5_gn_9_109101 Lactuca sativa HOM05D002044 ORTHO05D005000 7.1e-12 73.9 58 65.5
Nitab4.5_0009648g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005000 7.1e-12 73.9 75 53.3
ATR0564G141 Amborella trichopoda HOM05D002044 ORTHO05D005000 9.3e-12 73.6 56 67.9
Medtr8g076890 Medicago truncatula HOM05D002044 ORTHO05D005000 9.3e-12 73.6 52 73.1
THA.LOC104800774 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 9.3e-12 73.6 58 60.3
arahy.Tifrunner.gnm1.ann1.544LAE Arachis hypogaea HOM05D002044 ORTHO05D005000 1.2e-11 73.2 47 72.3
Cpa.g.sc6.171 Carica papaya HOM05D002044 ORTHO05D005000 1.2e-11 73.2 52 69.2
Cfa021838 Carpinus fangiana HOM05D002044 ORTHO05D005000 1.2e-11 73.2 58 67.2
Haze_13703 Corylus avellana HOM05D002044 ORTHO05D005000 1.2e-11 73.2 58 67.2
Lsat_1_v5_gn_5_168741 Lactuca sativa HOM05D002044 ORTHO05D005000 1.2e-11 73.2 58 65.5
MD15G1253500 Malus domestica HOM05D002044 ORTHO05D005000 1.2e-11 73.2 57 68.4
Oeu016116.1 Olea europaea HOM05D002044 ORTHO05D005000 1.2e-11 73.2 61 59.0
QL06p035291 Quercus lobata HOM05D002044 ORTHO05D005000 1.2e-11 73.2 57 64.9
vmacro04739 Vaccinium macrocarpon HOM05D002044 ORTHO05D005000 1.2e-11 73.2 58 62.1
CiPaw.07G051300 Carya illinoinensis HOM05D002044 ORTHO05D005000 2.1e-11 72.4 47 74.5
FAN23G1746 Fragaria x ananassa HOM05D002044 ORTHO05D005000 2.1e-11 72.4 59 64.4
FAN26G1165 Fragaria x ananassa HOM05D002044 ORTHO05D005000 2.1e-11 72.4 59 64.4
FAN28G2878 Fragaria x ananassa HOM05D002044 ORTHO05D005000 2.1e-11 72.4 59 64.4
MSTRG.23256 Avicennia marina HOM05D002044 ORTHO05D005000 2.7e-11 72.0 58 63.8
Ciclev10027615m.g Citrus clementina HOM05D002044 ORTHO05D005000 2.7e-11 72.0 47 70.2
Nitab4.5_0005274g0010 Nicotiana tabacum HOM05D002044 ORTHO05D005000 2.7e-11 72.0 52 65.4
Sc16g0009770 Simmondsia chinensis HOM05D002044 ORTHO05D005000 2.7e-11 72.0 47 74.5
CiPaw.07G050300 Carya illinoinensis HOM05D002044 ORTHO05D005000 3.5e-11 71.6 47 72.3
CDE10G0985 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 3.5e-11 71.6 68 54.4
MELO3C010633.2 Cucumis melo HOM05D002044 ORTHO05D005000 3.5e-11 71.6 52 65.4
Lj2g0004786 Lotus japonicus HOM05D002044 ORTHO05D005000 3.5e-11 71.6 58 62.1
Phvul.003G256900 Phaseolus vulgaris HOM05D002044 ORTHO05D005000 3.5e-11 71.6 62 62.9
CSS0033828 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 4.6e-11 71.2 52 63.5
ClCG08G005880 Citrullus lanatus HOM05D002044 ORTHO05D005000 4.6e-11 71.2 44 75.0
Ah.12g058700 Amaranthus hybridus HOM05D002044 ORTHO05D005000 6.0e-11 70.9 58 65.5
Duzib187G0459 Durio zibethinus HOM05D002044 ORTHO05D005000 6.0e-11 70.9 47 72.3
Lalb_Chr05g0225171 Lupinus albus HOM05D002044 ORTHO05D005000 6.0e-11 70.9 68 52.9
Aa31LG1G14930 Aethionema arabicum HOM05D002044 ORTHO05D005000 7.8e-11 70.5 52 59.6
Nitab4.5_0000136g0180 Nicotiana tabacum HOM05D002044 ORTHO05D005000 7.8e-11 70.5 52 63.5
Sed0002815 Sechium edule HOM05D002044 ORTHO05D005000 7.8e-11 70.5 52 65.4
BcaB01g00558 Brassica carinata HOM05D002044 ORTHO05D005000 1.0e-10 70.1 52 59.6
Eucgr.I02400 Eucalyptus grandis HOM05D002044 ORTHO05D005000 1.0e-10 70.1 51 66.7
Sp5g11240 Schrenkiella parvula HOM05D002044 ORTHO05D005000 1.0e-10 70.1 52 61.5
AL8G45120 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 1.3e-10 69.7 58 56.9
AT5G66410 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 1.3e-10 69.7 58 56.9
CSS0037031 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 1.3e-10 69.7 63 57.1
Carub.0008s2810 Capsella rubella HOM05D002044 ORTHO05D005000 1.3e-10 69.7 58 56.9
Os11g0604700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 1.3e-10 69.7 50 66.0
SalBow8G4592 Salvia bowleyana HOM05D002044 ORTHO05D005000 1.3e-10 69.7 59 61.0
Potri.007G020400 Populus trichocarpa HOM05D002044 ORTHO05D005000 1.7e-10 69.3 47 68.1
Prupe.5G010500 Prunus persica HOM05D002044 ORTHO05D005000 1.7e-10 69.3 44 72.7
AUR62018531 Chenopodium quinoa HOM05D002044 ORTHO05D005000 2.3e-10 68.9 58 63.8
TWI73G0506 Tripterygium wilfordii HOM05D002044 ORTHO05D005000 2.3e-10 68.9 58 60.3
Zm00001eb115010 Zea mays HOM05D001408 ORTHO05D001312 2.3e-10 68.9 47 70.2
Actinidia38434 Actinidia chinensis HOM05D002044 ORTHO05D005000 3.0e-10 68.6 52 61.5
CDE10G0804 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 3.0e-10 68.6 68 54.4
FvH4_5g33310 Fragaria vesca HOM05D002044 ORTHO05D005000 3.0e-10 68.6 59 57.6
FAN08G2684 Fragaria x ananassa HOM05D002044 ORTHO05D005000 3.0e-10 68.6 59 57.6
MD02G1141000 Malus domestica HOM05D002044 ORTHO05D005000 3.0e-10 68.6 52 65.4
Hund07197 Selenicereus undatus HOM05D002044 ORTHO05D005000 3.0e-10 68.6 65 55.4
CsaV3_6G034240 Cucumis sativus L. HOM05D002044 ORTHO05D005000 3.9e-10 68.2 47 70.2
FAN18G2776 Fragaria x ananassa HOM05D002044 ORTHO05D005000 3.9e-10 68.2 59 57.6
MBI02_g37834_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005000 3.9e-10 68.2 47 68.1
unitig_52.g17472 Utricularia gibba HOM05D002044 ORTHO05D005000 3.9e-10 68.2 67 56.7
BraA01t02282Z Brassica rapa HOM05D002044 ORTHO05D005000 5.1e-10 67.8 56 53.6
Thhalv10010762m.g Eutrema salsugineum HOM05D002044 ORTHO05D005000 5.1e-10 67.8 52 55.8
Glyma.02G053300 Glycine max HOM05D002044 ORTHO05D005000 5.1e-10 67.8 44 72.7
Os05g0255600 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 5.1e-10 67.8 59 54.2
EL10Ac4g09698 Beta vulgaris HOM05D002044 ORTHO05D005000 6.6e-10 67.4 62 51.6
Peaxi162Scf00008g03317 Petunia axillaris HOM05D002044 ORTHO05D005000 8.7e-10 67.0 43 69.8
TAR381G0355 Trochodendron aralioides HOM05D002044 ORTHO05D005000 8.7e-10 67.0 46 69.6
TAR625G1168 Trochodendron aralioides HOM05D002044 ORTHO05D005000 8.7e-10 67.0 47 66.0
Thecc.01G028600 Theobroma cacao HOM05D002044 ORTHO05D005000 1.1e-09 66.6 45 73.3
AUR62020887 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.5e-09 66.2 46 71.7
Hma1.2p1_1297F.1_g274030 Hydrangea macrophylla HOM05D002044 ORTHO05D005000 1.9e-09 65.9 39 79.5
A01p23720 Brassica napus HOM05D002044 ORTHO05D005000 3.3e-09 65.1 56 51.8
HanXRQChr09g0261201 Helianthus annuus HOM05D002044 ORTHO05D005000 5.6e-09 64.3 45 71.1
MBI16_g19187_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005000 5.6e-09 64.3 42 69.0
Manes.02G097501 Manihot esculenta HOM05D002044 ORTHO05D005000 5.6e-09 64.3 55 58.2
SalBow1G5811 Salvia bowleyana HOM05D002044 ORTHO05D005000 5.6e-09 64.3 41 73.2
BcaC07g39571 Brassica carinata HOM05D002044 ORTHO05D005000 7.3e-09 63.9 77 46.8
Lj2C458T3 Lonicera japonica HOM05D002044 ORTHO05D005000 7.3e-09 63.9 46 63.0
RcHm_v2.0_Chr2g0100611 Rosa chinensis HOM05D002044 ORTHO05D005000 7.3e-09 63.9 46 67.4
Cc07_g09970 Coffea canephora HOM05D002044 ORTHO05D005000 9.6e-09 63.5 49 59.2
FvH4_1g12650 Fragaria vesca HOM05D002044 ORTHO05D005000 9.6e-09 63.5 46 67.4
SHI08635 Sapria himalayana HOM05D002044 ORTHO05D005000 9.6e-09 63.5 65 46.2
Solyc02g062540.3 Solanum lycopersicum HOM05D002044 ORTHO05D005000 9.6e-09 63.5 71 46.5
Sopen02g013550 Solanum pennellii HOM05D002044 ORTHO05D005000 9.6e-09 63.5 71 46.5
PGSC0003DMG400015493 Solanum tuberosum HOM05D002044 ORTHO05D005000 1.3e-08 63.2 71 46.5
Zm00001eb167250 Zea mays HOM05D002044 ORTHO05D005000 1.3e-08 63.2 46 67.4
FAN04G1187 Fragaria x ananassa HOM05D002044 ORTHO05D005000 2.1e-08 62.4 46 63.0
HanXRQChr11g0325541 Helianthus annuus HOM05D002044 ORTHO05D005000 2.8e-08 62.0 42 71.4
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.6e-08 61.6 45 62.2
A09p44080 Brassica napus HOM05D002044 ORTHO05D005000 3.6e-08 61.6 45 62.2
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 3.6e-08 61.6 45 62.2
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 3.6e-08 61.6 45 62.2
BraA09t39866Z Brassica rapa HOM05D002044 ORTHO05D005000 3.6e-08 61.6 45 62.2
CAN.G1373.27 Capsicum annuum HOM05D002044 ORTHO05D005000 3.6e-08 61.6 47 61.7
SMO164G0166 Selaginella moellendorffii HOM05D002044 ORTHO05D005000 3.6e-08 61.6 55 56.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 4.8e-08 61.2 45 62.2
AT3G50960 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 6.2e-08 60.8 45 60.0
Carub.0005s1736 Capsella rubella HOM05D002044 ORTHO05D005000 6.2e-08 60.8 45 57.8
CARHR160540 Cardamine hirsuta HOM05D002044 ORTHO05D005000 6.2e-08 60.8 45 57.8
FAN19G2717 Fragaria x ananassa HOM05D002044 ORTHO05D005000 6.2e-08 60.8 38 73.7
BcaC07g39566 Brassica carinata HOM05D002044 ORTHO05D005000 8.1e-08 60.5 45 60.0
C08p26220 Brassica napus HOM05D002044 ORTHO05D005000 8.1e-08 60.5 45 60.0
BolC8t50240H Brassica oleracea HOM05D002044 ORTHO05D005000 8.1e-08 60.5 45 60.0
BcaC09g50060 Brassica carinata HOM05D000363 ORTHO05D005000 1.4e-07 59.7 45 57.8
C01p29480 Brassica napus HOM05D000363 ORTHO05D005000 1.4e-07 59.7 45 57.8
AL5G31360 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 1.8e-07 59.3 45 55.6
BcaC07g39569 Brassica carinata HOM05D002044 ORTHO05D005000 1.8e-07 59.3 62 50.0
BcaNung00405 Brassica carinata HOM05D002044 ORTHO05D005000 1.8e-07 59.3 45 55.6
Pp3c17_20760 Physcomitrium patens HOM05D002044 ORTHO05D005000 3.1e-07 58.5 53 52.8
BolC1t02889H Brassica oleracea HOM05D002044 ORTHO05D005000 4.0e-07 58.2 37 64.9
Zm00001eb382800 Zea mays HOM05D002044 ORTHO05D005000 4.0e-07 58.2 48 64.6
ECA232G0973 Erigeron canadensis HOM05D002044 ORTHO05D005000 5.3e-07 57.8 43 65.1
Lj4g0007934 Lotus japonicus HOM05D000394 ORTHO05D000299 6.9e-07 57.4 46 60.9
Zm00001eb028150 Zea mays HOM05D001671 ORTHO05D005000 9.0e-07 57.0 48 62.5
Zm00001eb145060 Zea mays HOM05D001671 ORTHO05D005000 9.0e-07 57.0 48 62.5
Zm00001eb426440 Zea mays HOM05D002044 ORTHO05D005000 1.2e-06 56.6 48 62.5
Zm00001eb411660 Zea mays HOM05D002044 ORTHO05D005000 2.6e-06 55.5 52 55.8
MCO09G765 Micromonas commoda HOM05D002044 ORTHO05D005000 5.8e-06 54.3 57 43.9
CBR_g943 Chara braunii HOM05D002044 ORTHO05D005000 9.9e-06 53.5 74 40.5


User provided reference genes

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