Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.2e-200 702.2 380 100.0
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.0e-80 304.7 398 51.0
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 4.5e-73 279.3 397 49.6
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 4.5e-65 252.7 405 46.9
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.9e-64 250.0 390 46.9
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.0e-61 241.5 403 44.4
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 2.9e-59 233.4 400 43.8
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 1.1e-58 231.5 338 48.2
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 1.2e-57 228.0 340 46.8
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 8.6e-56 221.9 406 45.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 5.6e-55 219.2 393 45.3
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 7.3e-55 218.8 398 45.5
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.2e-54 218.0 149 92.6
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 1.6e-54 217.6 394 39.8
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 3.1e-53 213.4 408 39.5
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 5.2e-53 212.6 371 42.0
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 1.5e-52 211.1 411 38.2
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 3.4e-52 209.9 400 42.8
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 8.3e-51 205.3 400 42.2
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 8.3e-51 205.3 382 44.2
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 2.4e-50 203.8 415 37.1
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 3.2e-50 203.4 354 39.3
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 3.2e-50 203.4 381 41.5
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 3.2e-50 203.4 400 42.5
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 3.5e-49 199.9 421 38.0
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 4.6e-49 199.5 396 41.7
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 4.6e-49 199.5 383 42.8
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 6.0e-49 199.1 417 37.6
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.7e-48 197.6 427 38.2
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 3.9e-48 196.4 434 39.9
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.1e-47 194.9 397 41.1
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.5e-47 194.5 397 41.1
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 3.3e-47 193.4 387 41.3
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 5.6e-47 192.6 383 40.5
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 5.6e-47 192.6 383 40.5
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 5.6e-47 192.6 307 42.3
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 5.6e-47 192.6 394 39.8
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.2e-46 191.4 393 41.0
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.6e-46 191.0 371 40.7
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 8.1e-46 188.7 388 39.2
Aqoxy7G02275 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.1e-45 188.3 136 92.6
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 1.4e-45 188.0 379 39.6
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.4e-45 188.0 372 36.8
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 1.8e-45 187.6 388 41.0
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 5.2e-45 186.0 383 39.9
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 5.2e-45 186.0 396 39.6
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 5.2e-45 186.0 383 41.0
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 1.5e-44 184.5 399 37.8
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.5e-44 184.5 373 40.5
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 1.5e-44 184.5 385 40.0
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 1.5e-44 184.5 386 38.3
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 2.0e-44 184.1 386 40.2
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.0e-44 184.1 380 40.0
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 4.4e-44 183.0 396 36.4
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 5.8e-44 182.6 392 39.8
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 5.8e-44 182.6 422 39.3
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 9.9e-44 181.8 384 39.3
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 2.2e-43 180.6 381 41.2
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 3.7e-43 179.9 424 38.4
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 2.4e-42 177.2 356 39.9
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 3.2e-42 176.8 283 41.3
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 4.1e-42 176.4 391 38.4
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 2.7e-41 173.7 383 37.9
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 3.5e-41 173.3 385 39.5
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 3.5e-41 173.3 396 38.6
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 6.0e-41 172.6 329 40.7
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 7.8e-41 172.2 421 38.2
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.0e-40 171.8 413 35.8
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 1.7e-40 171.0 388 41.0
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 3.0e-40 170.2 335 41.5
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 5.1e-40 169.5 387 38.5
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 6.6e-40 169.1 273 42.5
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 6.6e-40 169.1 392 35.5
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 8.6e-40 168.7 389 38.0
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.1e-39 168.3 419 35.3
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 1.5e-39 167.9 299 37.5
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.5e-39 167.9 387 38.0
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 3.3e-39 166.8 405 34.1
Aqoxy1G04021 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 5.6e-39 166.0 119 95.8
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 7.3e-39 165.6 371 36.9
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 7.3e-39 165.6 293 42.0
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 7.3e-39 165.6 384 37.0
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 9.5e-39 165.2 375 39.7
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 3.1e-37 160.2 359 39.8
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 8.9e-37 158.7 378 35.7
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 1.3e-35 154.8 386 37.8
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 2.2e-35 154.1 390 36.2
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.9e-35 152.9 373 38.1
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 4.2e-34 149.8 385 39.2
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 9.2e-34 148.7 290 44.1
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 3.5e-33 146.7 236 39.8
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 7.8e-33 145.6 330 39.4
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 2.3e-32 144.1 373 37.3
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 2.3e-32 144.1 404 34.4
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 1.3e-30 138.3 376 35.1
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 2.8e-30 137.1 253 39.1
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 3.6e-30 136.7 336 39.0
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 5.8e-28 129.4 384 37.5
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.9e-27 127.1 385 33.8
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 8.4e-27 125.6 385 29.9
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 1.1e-26 125.2 385 33.8
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.9e-26 124.4 380 36.3
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 5.4e-26 122.9 378 35.7
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 9.3e-26 122.1 383 32.9
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 2.7e-25 120.6 381 36.5
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 5.1e-24 116.3 380 33.2
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 6.6e-24 115.9 381 34.9
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 2.5e-23 114.0 350 34.0
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 7.3e-23 112.5 96 58.3
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.3e-22 111.7 385 34.3
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 1.4e-21 108.2 196 35.7
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 2.6e-20 104.0 383 34.5
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 4.5e-20 103.2 252 38.9
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 3.8e-19 100.1 186 37.1
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-18 98.6 347 33.7
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 2.1e-17 94.4 216 34.3
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 3.0e-16 90.5 88 56.8
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.3e-14 85.1 161 41.6
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.3e-14 85.1 322 32.3
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 3.7e-14 83.6 67 61.2
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.1e-13 82.0 322 31.7
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 6.5e-11 72.8 50 62.0
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.4e-10 71.6 44 68.2
FvH4_4g21660 Fragaria vesca HOM05D005773 ORTHO05D046089 4.6e-09 66.6 161 34.8
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 4.6e-09 66.6 106 41.5
FAN12G0946 Fragaria x ananassa HOM05D005773 ORTHO05D046089 3.9e-08 63.5 173 37.0
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 9.6e-07 58.9 92 40.2
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 2.1e-06 57.8 93 35.5
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 2.8e-06 57.4 94 35.1
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 2.8e-06 57.4 92 34.8


User provided reference genes

Program Settings