Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.4e-71 271.2 135 100.0
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.3e-70 267.3 135 97.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.2e-56 221.1 130 82.3
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.8e-55 217.6 130 78.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.1e-53 213.4 130 79.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.1e-53 211.5 130 76.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.0e-52 209.1 130 76.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.7e-52 208.8 130 76.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.5e-52 208.4 130 77.7
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.6e-52 208.0 130 74.6
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.0e-52 207.6 127 78.0
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 6.0e-52 207.6 130 76.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.3e-51 205.7 132 76.5
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.9e-51 204.9 130 75.4
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.0e-51 204.5 129 76.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.6e-51 204.1 127 78.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 8.6e-51 203.8 132 75.8
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.1e-50 203.4 130 73.1
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.5e-50 202.2 130 78.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.5e-50 202.2 129 76.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.5e-50 202.2 129 76.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.5e-50 202.2 129 76.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-50 202.2 122 79.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.3e-50 201.8 129 74.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 3.3e-50 201.8 129 75.2
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.3e-50 201.4 130 76.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.3e-50 201.4 122 79.5
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.2e-49 199.9 130 72.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.2e-49 199.9 123 78.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.6e-49 199.5 130 71.5
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.1e-49 199.1 123 79.7
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.1e-49 199.1 130 73.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.1e-49 199.1 130 76.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.1e-49 199.1 122 77.9
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.1e-49 199.1 129 74.4
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-49 198.7 129 75.2
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.6e-49 198.4 126 77.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.6e-49 198.4 130 73.1
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 4.7e-49 198.0 123 78.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.2e-49 197.6 129 74.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.1e-49 197.2 124 76.6
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 8.1e-49 197.2 125 76.0
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.1e-48 196.8 130 75.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.1e-48 196.8 126 73.8
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-48 196.8 135 72.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.4e-48 196.4 128 73.4
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-48 196.4 122 77.9
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.8e-48 196.1 129 72.9
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.3e-48 195.7 123 76.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.1e-48 195.3 129 76.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.0e-48 194.9 134 70.9
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.0e-48 194.9 120 80.8
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 4.0e-48 194.9 129 76.0
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 5.2e-48 194.5 130 70.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 8.9e-48 193.7 128 72.7
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-47 193.4 124 75.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-47 193.0 120 79.2
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.5e-47 193.0 123 77.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.5e-47 193.0 132 71.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.0e-47 192.6 128 72.7
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 2.0e-47 192.6 120 76.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.6e-47 192.2 129 72.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.4e-47 191.4 130 69.2
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-47 191.0 128 69.5
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.8e-47 190.3 130 71.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-46 189.5 127 66.1
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.7e-46 188.3 120 74.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 4.9e-46 188.0 128 68.0
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.9e-46 188.0 128 72.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 6.4e-46 187.6 127 71.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.4e-46 187.6 127 70.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.4e-45 186.4 127 70.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.9e-45 186.0 120 75.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.4e-45 185.7 127 66.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.4e-45 185.7 122 73.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.4e-45 185.7 130 69.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-45 185.7 128 68.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 5.4e-45 184.5 126 72.2
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 7.1e-45 184.1 128 66.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 9.2e-45 183.7 127 68.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 9.2e-45 183.7 127 70.9
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.2e-44 183.3 147 62.6
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-44 183.0 125 69.6
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-44 182.2 127 69.3
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.5e-44 181.8 123 69.1
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 6.0e-44 181.0 124 70.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 6.0e-44 181.0 128 68.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 7.8e-44 180.6 124 65.3
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-43 180.3 124 69.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.0e-43 180.3 120 73.3
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.3e-43 179.9 126 67.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.7e-43 179.5 117 76.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 69.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.3e-43 179.1 123 69.9
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.0e-43 178.7 127 69.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 5.1e-43 177.9 126 69.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.1e-43 177.9 129 65.9
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 6.6e-43 177.6 119 72.3
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 8.6e-43 177.2 127 68.5
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.1e-42 176.8 126 68.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-42 176.8 125 64.8
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.1e-42 176.8 128 65.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.9e-42 176.0 126 69.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 4.3e-42 174.9 119 69.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.5e-42 173.7 124 68.5
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 9.5e-42 173.7 112 74.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.3e-40 169.1 124 65.3
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.0e-40 168.3 112 68.8
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.0e-40 168.3 124 65.3
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.0e-40 168.3 124 66.1
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.8e-40 167.5 108 76.9
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 6.8e-40 167.5 119 66.4
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-39 166.0 104 77.9
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.9e-39 163.7 125 66.4
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.3e-38 163.3 118 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.7e-38 162.9 119 63.9
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 3.8e-38 161.8 125 61.6
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-37 160.2 112 70.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-37 159.5 118 65.3
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-37 158.3 101 72.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-37 158.3 101 72.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 9.2e-37 157.1 121 61.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 9.2e-37 157.1 121 61.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 9.2e-37 157.1 121 61.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.6e-36 154.8 120 60.8
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.6e-36 154.8 117 64.1
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.8e-36 154.1 131 56.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.0e-35 153.7 120 59.2
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.0e-35 153.7 121 59.5
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 125 59.2
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.7e-35 152.9 131 57.3
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 63.3
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.0e-35 152.1 121 60.3
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.9e-35 151.8 128 58.6
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.1e-35 151.4 131 55.7
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-34 150.2 121 60.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.1e-34 150.2 121 59.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-34 149.4 121 59.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 121 59.5
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.5e-34 149.1 121 60.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.5e-34 149.1 118 58.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.3e-34 148.7 120 57.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.3e-34 148.3 120 58.3
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.6e-34 147.9 118 60.2
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 9.6e-34 147.1 127 58.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 9.6e-34 147.1 127 58.3
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 9.6e-34 147.1 117 59.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.2e-33 146.7 121 59.5
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.2e-33 146.7 121 59.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.6e-33 146.4 119 60.5
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 61.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.2e-33 144.4 121 58.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 6.2e-33 144.4 127 57.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.8e-32 142.9 107 65.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.2e-30 136.0 132 53.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.4e-30 134.4 117 57.3
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.1e-29 133.7 80 78.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.7e-28 129.0 120 51.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-25 120.2 66 83.3
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.6e-20 101.7 59 81.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.7e-19 97.8 80 70.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 8.1e-17 90.9 66 65.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 8.1e-17 90.9 53 75.5
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.1e-16 89.0 53 79.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.0e-16 88.6 112 42.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.2e-15 87.0 56 73.2
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-15 86.3 64 70.3
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.4e-15 85.5 64 64.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.4e-15 85.5 64 64.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.5e-15 85.1 61 70.5
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.6e-15 84.3 62 59.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-14 83.6 120 39.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-14 83.2 62 67.7
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.9e-10 69.7 51 66.7
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.9e-10 69.7 59 59.3
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.6e-10 68.2 67 53.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.7e-06 56.6 63 44.4
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 2.2e-06 56.2 34 79.4


User provided reference genes

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