Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-196 689.1 365 100.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-135 486.1 350 78.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.7e-122 443.4 320 78.1
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.4e-76 288.1 332 51.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-74 283.9 332 51.5
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.1e-71 272.7 332 48.8
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 3.5e-70 269.6 327 49.2
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 4.5e-70 269.2 329 48.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-69 268.1 330 50.6
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.7e-69 267.3 330 49.1
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 5.0e-69 265.8 329 48.3
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 8.5e-69 265.0 333 46.5
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.5e-68 263.5 328 47.3
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 5.5e-68 262.3 327 48.3
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 7.2e-68 261.9 331 47.1
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 9.4e-68 261.5 330 47.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.7e-67 260.0 330 47.9
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.1e-67 258.8 332 46.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.1e-65 254.6 297 50.8
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.5e-65 254.2 328 45.1
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.5e-65 254.2 341 45.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.3e-64 251.1 308 48.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.7e-64 250.8 331 45.0
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 2.2e-64 250.4 331 44.1
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.8e-64 250.0 327 46.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.1e-63 246.5 317 45.7
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.1e-63 246.5 349 43.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 5.9e-62 242.3 312 44.9
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 5.9e-62 242.3 317 45.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.0e-61 241.5 332 44.3
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-61 240.7 331 45.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-61 240.7 331 45.0
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.9e-61 240.0 328 43.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 6.5e-61 238.8 326 45.1
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-60 238.0 324 44.1
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 4.2e-60 236.1 321 43.3
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 7.2e-60 235.3 331 42.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.6e-59 234.2 330 43.0
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.1e-59 233.8 364 40.4
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.0e-59 231.9 328 43.3
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.4e-58 231.1 337 43.9
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.4e-58 231.1 297 45.5
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.8e-58 230.7 333 45.0
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.3e-58 230.3 311 43.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.3e-58 230.3 337 42.1
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 3.0e-58 229.9 331 42.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 5.2e-58 229.2 308 42.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-57 227.6 333 44.1
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 5.7e-57 225.7 296 46.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 9.8e-57 224.9 316 41.8
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-56 224.6 316 41.8
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.3e-56 224.6 310 43.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.2e-56 223.8 310 43.9
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.8e-56 223.4 335 42.7
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-56 223.0 316 41.8
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 6.3e-56 222.2 304 41.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 8.3e-56 221.9 296 45.9
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.1e-55 221.5 306 42.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.4e-55 221.1 291 44.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.1e-55 219.9 310 43.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 9.1e-55 218.4 323 42.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 9.1e-55 218.4 307 41.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.6e-54 217.6 310 42.6
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-54 217.6 310 42.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.0e-54 217.2 327 40.1
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.7e-54 216.9 327 40.4
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.5e-54 216.5 294 44.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 3.5e-54 216.5 294 44.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 4.5e-54 216.1 327 40.4
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.9e-54 215.7 299 43.5
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.9e-54 215.7 294 44.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.7e-54 215.3 372 39.5
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.0e-53 214.9 323 41.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.0e-53 214.9 328 41.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.0e-53 214.9 322 39.8
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.3e-53 214.5 325 42.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.7e-53 214.2 325 42.8
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.8e-53 213.0 320 39.7
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 6.5e-53 212.2 302 42.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.5e-52 209.1 329 39.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.2e-52 208.8 303 42.6
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.8e-50 204.1 298 41.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.3e-50 203.8 314 40.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.0e-50 203.0 321 39.9
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 6.8e-50 202.2 330 37.9
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 6.8e-50 202.2 325 41.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.8e-50 202.2 325 40.0
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.8e-50 201.8 327 38.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.0e-49 200.7 332 40.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.4e-49 199.5 329 37.4
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 5.7e-49 199.1 329 38.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-48 196.4 331 37.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-47 194.5 321 38.0
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.1e-47 193.4 316 38.6
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.5e-46 189.5 327 37.6
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 4.5e-46 189.5 181 56.4
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-45 188.0 334 37.7
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.3e-45 187.2 329 36.2
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.8e-45 186.4 196 50.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 5.6e-44 182.6 329 36.8
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.2e-43 181.4 327 38.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.2e-43 181.4 188 53.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.1e-43 180.6 179 58.1
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.6e-43 179.9 284 41.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 6.1e-43 179.1 196 50.5
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.5e-41 174.5 180 54.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.6e-41 173.7 329 37.4
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.6e-41 173.7 308 35.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.4e-41 172.9 282 39.4
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.7e-41 172.6 180 55.0
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.7e-40 171.0 320 35.6
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.2e-40 170.6 326 36.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.2e-40 170.6 321 35.5
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.9e-40 170.2 328 34.8
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.7e-40 169.9 320 34.7
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.7e-40 169.9 320 34.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 4.9e-40 169.5 328 35.1
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.4e-40 169.1 328 35.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.4e-39 167.9 322 37.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.4e-39 167.2 162 53.1
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.2e-39 165.2 329 34.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 9.2e-39 165.2 328 33.8
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.0e-38 164.1 328 33.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.0e-38 164.1 328 33.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.5e-36 157.9 331 32.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.3e-36 156.8 328 29.9
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.3e-34 150.6 329 32.2
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.3e-32 144.8 281 33.5
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.5e-28 131.3 268 32.8
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.3e-26 124.0 180 40.6
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.4e-24 115.9 186 41.9
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-23 114.0 186 40.9
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.0e-22 109.4 125 44.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 7.8e-22 109.0 161 33.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.0e-21 108.6 100 58.0
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-21 108.2 162 38.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.3e-20 102.4 163 38.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.6e-17 94.0 184 36.4
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.3e-16 91.7 95 55.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-16 90.9 150 41.3
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.9e-16 90.5 109 50.5
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.9e-16 90.5 119 42.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.7e-16 90.1 76 59.2
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.9e-15 87.8 192 33.3
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.2e-15 87.0 126 41.3
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.0e-14 82.8 64 67.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.0e-14 82.8 64 67.2
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 7.8e-14 82.4 138 38.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.9e-13 80.1 97 46.4
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-12 78.6 74 55.4
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-12 77.4 74 55.4
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.1e-10 70.5 133 36.8
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.1e-10 70.5 197 29.4
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 4.0e-10 70.1 177 29.9
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.0e-10 70.1 101 41.6
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 1.5e-09 68.2 67 52.2
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.6e-09 67.4 87 50.6
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.1e-06 57.8 72 50.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.1e-06 57.8 76 42.1


User provided reference genes

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