Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 0.0e+00 1252.7 634 100.0
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.1e-293 1010.0 684 80.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.9e-209 733.0 695 60.4
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.7e-194 683.3 667 58.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 8.6e-194 681.0 679 57.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.5e-193 679.5 686 57.4
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.6e-187 660.2 626 57.7
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.6e-185 651.7 674 56.7
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.6e-185 651.7 648 58.3
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 5.6e-185 651.7 590 59.5
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 2.8e-184 649.4 676 55.6
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.4e-183 646.4 639 56.3
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 1.4e-180 637.1 675 54.1
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 7.1e-180 634.8 583 59.3
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.9e-177 626.7 616 57.3
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.9e-177 626.7 650 53.4
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 7.3e-177 624.8 616 57.0
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 9.6e-177 624.4 613 57.1
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.1e-176 623.2 669 55.0
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 2.1e-176 623.2 658 54.4
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.8e-176 622.9 630 55.7
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.4e-175 620.5 646 55.4
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.4e-174 615.9 662 55.1
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 4.5e-174 615.5 677 53.3
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 9.9e-174 614.4 696 52.3
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 2.2e-173 613.2 631 53.9
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 2.9e-173 612.8 664 54.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 8.4e-173 611.3 676 54.1
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.9e-172 610.1 620 55.3
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 4.2e-172 609.0 679 51.3
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.6e-171 607.1 665 53.4
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.8e-170 603.6 679 51.7
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.1e-169 600.9 546 59.3
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 3.7e-168 595.9 643 52.6
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 3.4e-166 589.3 710 49.0
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-165 587.4 677 52.3
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.7e-165 587.0 667 52.0
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.1e-164 584.3 643 52.7
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-164 584.3 669 50.4
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.4e-164 583.9 636 52.8
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.6e-163 580.5 685 51.2
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.1e-163 580.1 680 50.1
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 2.7e-163 579.7 643 52.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 4.6e-163 578.9 669 49.6
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 6.0e-163 578.6 579 53.7
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 3.0e-162 576.2 667 51.6
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 6.7e-162 575.1 650 53.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 2.5e-161 573.2 684 51.2
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 5.7e-161 572.0 600 54.0
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 9.6e-161 571.2 680 51.0
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.3e-160 570.9 660 52.9
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 2.1e-160 570.1 603 53.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 6.2e-160 568.5 656 51.4
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.8e-159 567.0 655 53.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.8e-159 567.0 671 52.2
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.8e-159 567.0 677 50.2
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 6.9e-159 565.1 961 40.3
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 9.0e-159 564.7 672 49.7
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 2.0e-158 563.5 665 51.0
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.8e-158 562.0 459 70.4
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 5.8e-158 562.0 594 54.2
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 5.5e-156 555.4 684 50.3
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 4.6e-155 552.4 650 50.3
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.1e-155 552.0 710 47.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 6.1e-155 552.0 579 53.0
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 6.1e-155 552.0 642 48.6
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-154 550.8 678 50.9
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.3e-154 550.1 637 51.2
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.9e-154 549.3 569 53.8
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 6.3e-152 542.0 653 49.8
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 5.9e-150 535.4 640 49.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 5.5e-148 528.9 650 47.4
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.6e-147 526.2 636 50.3
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.5e-145 520.0 662 47.3
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 9.7e-145 518.1 825 41.7
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.2e-144 516.9 543 54.3
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.8e-143 513.8 583 51.3
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.8e-143 513.8 651 49.5
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 5.9e-142 508.8 600 48.8
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-141 507.7 598 48.7
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 3.8e-141 506.1 689 46.9
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.6e-139 499.6 402 64.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.7e-139 499.2 622 46.6
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.5e-137 494.2 651 44.7
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 1.1e-135 488.0 615 48.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.5e-134 484.2 730 43.8
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 3.2e-132 476.5 668 43.7
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 6.7e-130 468.8 353 66.9
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.0e-129 467.2 669 44.7
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.7e-125 454.1 566 45.1
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.1e-123 447.2 707 41.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 6.1e-123 445.7 599 41.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 5.7e-121 439.1 578 44.1
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.5e-121 438.7 675 41.9
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.6e-118 431.0 293 69.3
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.7e-118 430.3 694 41.2
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 2.2e-117 427.2 678 38.5
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 4.4e-113 412.9 554 46.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 8.6e-109 398.7 521 44.9
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 6.3e-104 382.5 285 66.0
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.0e-101 375.2 412 47.6
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 4.3e-100 369.8 509 47.2
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.2e-89 335.1 398 49.5
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.2e-82 309.7 276 59.4
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 8.9e-82 308.9 423 40.4
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 7.1e-71 272.7 403 39.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.7e-70 270.8 569 36.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.5e-68 265.0 411 36.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.5e-68 265.0 215 62.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 5.3e-66 256.5 501 36.1
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.3e-66 256.5 155 78.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 2.2e-64 251.1 155 78.1
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.1e-63 248.8 301 48.5
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 7.1e-63 246.1 349 45.0
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.1e-62 244.6 321 46.4
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.0e-58 230.3 324 38.9
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-56 225.3 147 72.1
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.9e-56 224.2 147 74.1
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.4e-56 222.6 135 78.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.9e-55 221.5 287 43.2
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.9e-47 194.9 350 32.3
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.7e-44 183.3 472 36.7
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.7e-43 180.6 92 97.8
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 4.5e-41 173.7 282 42.2
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.2e-38 165.6 424 35.6
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 7.4e-36 156.4 118 68.6
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.3e-35 155.6 206 47.1
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.9e-32 144.4 84 81.0
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 5.1e-29 133.7 83 74.7
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-27 129.0 97 62.9
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 2.8e-27 127.9 300 32.7
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 3.7e-27 127.5 132 52.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.5e-25 120.6 196 45.4
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 7.7e-25 119.8 186 43.0
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 8.5e-24 116.3 290 34.8
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.5e-23 114.8 105 59.0
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 3.2e-23 114.4 161 42.2
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.0e-21 109.4 70 75.7
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.3e-21 108.2 231 38.1
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-20 103.6 312 33.0
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 7.4e-20 103.2 146 45.9
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.7e-19 102.1 133 42.1
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.2e-17 95.9 97 57.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.9e-15 88.6 200 36.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.8e-10 72.0 154 33.8
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.9e-08 64.7 167 33.5
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 1.2e-06 59.3 43 65.1
Aqoxy2G02182 Aquilegia oxysepala HOM05D000751 ORTHO05D078103 1.6e-06 58.9 47 72.3
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.1e-06 57.0 117 38.5
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 8.0e-06 56.6 44 61.4


User provided reference genes

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