Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 0.0e+00 1516.9 773 100.0
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.7e-300 1035.8 782 70.7
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.2e-294 1014.2 534 97.4
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-292 1009.2 684 80.4
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.1e-275 953.4 702 69.2
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 6.7e-273 944.1 777 64.7
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.3e-271 939.9 780 65.0
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.0e-265 920.2 773 64.8
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.6e-258 896.3 764 63.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.3e-257 892.5 714 65.0
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 2.5e-256 889.0 760 63.4
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 8.2e-255 884.0 713 65.9
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.7e-253 877.5 766 61.4
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.9e-252 875.5 770 61.6
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 1.1e-251 873.6 761 61.8
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 2.1e-250 869.4 770 61.6
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 6.9e-246 854.4 757 61.8
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.7e-244 849.7 769 60.3
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.8e-241 839.7 721 62.6
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.3e-241 839.3 760 60.0
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 3.9e-241 838.6 766 59.9
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 2.2e-239 832.8 682 64.4
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.2e-239 832.8 706 60.3
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.4e-238 829.3 714 62.5
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.3e-236 823.5 772 58.8
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.2e-236 822.8 623 67.1
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.1e-235 820.5 677 62.5
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 4.2e-235 818.5 717 60.0
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 4.2e-235 818.5 721 60.3
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 7.2e-235 817.8 620 66.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.2e-234 817.0 623 66.5
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 2.1e-234 816.2 724 60.1
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.1e-234 814.7 774 59.3
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.8e-233 813.1 657 65.6
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 5.7e-232 808.1 779 57.8
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.1e-230 803.9 770 59.0
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.3e-230 801.6 542 72.7
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.2e-229 800.4 703 59.6
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.2e-229 800.4 764 58.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 5.0e-228 795.0 766 57.7
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 8.5e-228 794.3 703 58.9
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 3.2e-227 792.3 767 57.8
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 3.2e-227 792.3 743 56.7
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.6e-226 790.0 769 57.6
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.1e-226 789.6 774 55.0
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.5e-224 783.5 764 58.0
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 7.5e-224 781.2 788 56.2
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 7.5e-224 781.2 769 58.4
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.3e-223 780.4 648 62.5
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 4.8e-223 778.5 769 57.1
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 6.3e-223 778.1 772 57.3
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.1e-222 777.3 769 57.2
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.4e-222 776.9 777 57.4
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.2e-221 773.9 762 57.1
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 2.0e-221 773.1 767 56.6
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 8.6e-220 767.7 779 56.2
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 8.6e-220 767.7 655 61.2
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 2.5e-219 766.1 1071 45.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.0e-218 761.1 789 54.4
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 8.0e-218 761.1 685 59.9
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 3.4e-216 755.7 687 59.0
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 7.5e-216 754.6 751 55.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 7.0e-214 748.0 656 60.4
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.2e-213 747.3 582 62.4
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.7e-212 743.4 684 58.5
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 2.3e-212 743.0 765 55.3
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.6e-210 736.9 739 54.3
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 6.1e-210 734.9 584 63.7
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.0e-208 729.9 816 52.6
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.4e-208 729.2 706 56.9
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.9e-207 725.3 883 49.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.4e-207 724.9 764 54.1
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 3.3e-203 712.6 661 55.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 9.5e-203 711.1 713 55.7
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.5e-200 703.7 675 56.6
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 4.4e-200 702.2 758 52.5
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.4e-198 696.4 674 56.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 7.0e-198 694.9 553 63.8
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.6e-197 692.2 779 52.5
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.3e-196 689.9 712 55.1
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.7e-191 673.7 605 56.7
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.1e-188 662.1 634 54.6
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 4.9e-183 645.6 621 55.1
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.0e-180 637.9 675 50.8
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.5e-179 634.0 697 49.2
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 9.6e-179 631.3 619 55.3
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.1e-174 617.8 723 48.8
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.9e-174 617.1 684 50.4
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 4.2e-174 615.9 732 49.5
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.7e-173 613.2 585 58.6
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.0e-165 585.5 410 71.0
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.1e-163 581.3 777 44.9
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.2e-160 571.2 712 44.7
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.4e-160 569.7 534 55.2
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.5e-160 569.3 854 42.6
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 7.6e-160 568.5 613 48.0
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 8.2e-154 548.5 751 43.1
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.2e-149 534.6 381 70.1
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.8e-143 513.1 407 64.4
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.3e-139 500.0 659 42.9
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 4.2e-134 483.0 705 44.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 6.3e-122 442.6 356 63.5
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 8.2e-122 442.2 315 68.3
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 3.1e-121 440.3 447 57.7
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.8e-119 433.3 330 63.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.5e-118 431.4 293 68.9
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.4e-116 424.9 336 62.2
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.8e-116 422.2 711 39.1
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 8.5e-111 405.6 564 47.7
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 6.1e-101 372.9 501 42.1
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 9.8e-99 365.5 446 42.6
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 2.7e-96 357.5 526 38.4
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 6.1e-93 346.3 358 52.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 5.2e-92 343.2 541 39.0
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.9e-87 327.0 505 44.8
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 8.0e-85 319.3 313 56.5
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 7.8e-80 302.8 336 53.6
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.0e-75 288.1 729 31.6
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 2.2e-74 284.6 561 32.3
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.7e-69 266.9 215 63.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.9e-65 255.0 155 77.4
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 9.3e-65 252.7 155 78.1
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 5.3e-60 236.9 204 61.8
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.4e-57 226.9 147 72.1
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 9.3e-57 226.1 147 74.1
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.7e-56 224.6 135 79.3
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 7.9e-56 223.0 287 43.2
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 5.6e-54 216.9 376 42.6
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 5.8e-51 206.8 345 41.7
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.6e-51 206.5 211 49.8
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-50 205.7 197 54.8
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.1e-49 202.6 288 45.1
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 3.9e-47 194.1 179 57.0
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 9.6e-46 189.5 361 38.0
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.3e-45 189.1 345 38.6
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 6.9e-44 183.3 232 47.0
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.2e-43 182.6 117 82.9
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.0e-43 181.8 101 91.1
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.8e-43 180.3 92 96.7
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.2e-35 156.0 118 67.8
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.2e-35 156.0 283 41.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.5e-33 148.3 284 41.2
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.6e-32 144.1 84 79.8
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.0e-31 142.9 298 34.6
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 8.2e-29 133.3 83 73.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.5e-27 127.5 97 61.9
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.8e-23 115.5 105 60.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.7e-21 109.0 70 74.3
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.7e-21 107.8 85 62.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-20 104.8 307 33.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-19 102.8 94 58.5
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-17 96.3 97 58.8
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.7e-16 90.9 86 52.3
Cpa.g.sc86.29 Carica papaya HOM05D000751 ORTHO05D005618 1.4e-07 62.8 109 45.0
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 1.5e-06 59.3 43 65.1
Aqoxy2G02182 Aquilegia oxysepala HOM05D000751 ORTHO05D078103 5.7e-06 57.4 60 60.0


User provided reference genes

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