Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02025 Aquilegia oxysepala HOM05D000016 ORTHO05D078440 7.9e-67 256.9 124 100.0
FAN18G2181 Fragaria x ananassa HOM05D000016 ORTHO05D000450 3.0e-10 68.9 63 49.2
RcHm_v2.0_Chr7g0185191 Rosa chinensis HOM05D000016 ORTHO05D000450 6.8e-10 67.8 48 62.5
TAR040G0003 Trochodendron aralioides HOM05D000016 ORTHO05D000450 6.8e-10 67.8 90 40.0
FAN04G0583 Fragaria x ananassa HOM05D000016 ORTHO05D000450 1.5e-09 66.6 48 60.4
FAN13G2155 Fragaria x ananassa HOM05D000016 ORTHO05D000450 1.5e-09 66.6 48 60.4
FvH4_5g12400 Fragaria vesca HOM05D000016 ORTHO05D000450 2.0e-09 66.2 48 58.3
MD14G1224600 Malus domestica HOM05D000016 ORTHO05D000450 2.0e-09 66.2 48 62.5
FAN18G2211 Fragaria x ananassa HOM05D000016 ORTHO05D000450 2.6e-09 65.9 48 58.3
FAN08G2355 Fragaria x ananassa HOM05D000025 ORTHO05D000450 3.4e-09 65.5 48 58.3
TAR374G0011 Trochodendron aralioides HOM05D000016 ORTHO05D000450 3.4e-09 65.5 63 47.6
FvH4_5g12350 Fragaria vesca HOM05D000016 ORTHO05D000450 4.4e-09 65.1 48 58.3
FvH4_5g12392 Fragaria vesca HOM05D000016 ORTHO05D000450 4.4e-09 65.1 48 58.3
FvH4_5g12380 Fragaria vesca HOM05D000016 ORTHO05D000450 7.5e-09 64.3 48 58.3
FAN18G2709 Fragaria x ananassa HOM05D000016 ORTHO05D000450 7.5e-09 64.3 48 58.3
FvH4_2g37340 Fragaria vesca HOM05D000016 ORTHO05D000450 9.8e-09 63.9 48 56.2
MD14G1224900 Malus domestica HOM05D000016 ORTHO05D000450 9.8e-09 63.9 45 62.2
RcHm_v2.0_Chr6g0280191 Rosa chinensis HOM05D000016 ORTHO05D000450 9.8e-09 63.9 48 58.3
RcHm_v2.0_Chr7g0185111 Rosa chinensis HOM05D000016 ORTHO05D000450 9.8e-09 63.9 48 60.4
TAR040G0001 Trochodendron aralioides HOM05D000016 ORTHO05D000450 9.8e-09 63.9 63 47.6
TAR374G1170 Trochodendron aralioides HOM05D000016 ORTHO05D000450 9.8e-09 63.9 63 47.6
Actinidia35082 Actinidia chinensis HOM05D000016 ORTHO05D000450 1.3e-08 63.5 48 60.4
Thecc.03G032300 Theobroma cacao HOM05D000016 ORTHO05D000450 1.3e-08 63.5 48 58.3
QL06p048846 Quercus lobata HOM05D000016 ORTHO05D000450 2.2e-08 62.8 57 49.1
COL.COLO4_03325 Corchorus olitorius HOM05D000016 ORTHO05D000450 2.8e-08 62.4 48 56.2
Duzib052G0767 Durio zibethinus HOM05D000016 ORTHO05D000450 2.8e-08 62.4 91 41.8
Duzib205G1503 Durio zibethinus HOM05D000016 ORTHO05D000450 2.8e-08 62.4 91 41.8
RcHm_v2.0_Chr6g0280241 Rosa chinensis HOM05D000025 ORTHO05D000450 2.8e-08 62.4 48 56.2
Thecc.03G031900 Theobroma cacao HOM05D000025 ORTHO05D000450 2.8e-08 62.4 48 60.4
RcHm_v2.0_Chr2g0140591 Rosa chinensis HOM05D000016 ORTHO05D000450 4.9e-08 61.6 48 58.3
COL.COLO4_06734 Corchorus olitorius HOM05D000025 ORTHO05D000450 6.3e-08 61.2 64 45.3
Glyma.09G186400 Glycine max HOM05D000016 ORTHO05D000450 6.3e-08 61.2 48 56.2
DCAR_027830 Daucus carota HOM05D000025 ORTHO05D000450 8.3e-08 60.8 90 38.9
Dinv02430 Davidia involucrata HOM05D000025 ORTHO05D000450 8.3e-08 60.8 48 56.2
Thecc.03G032800 Theobroma cacao HOM05D000016 ORTHO05D000450 8.3e-08 60.8 91 40.7
Duzib052G0680 Durio zibethinus HOM05D000016 ORTHO05D000450 1.1e-07 60.5 91 41.8
Glyma.07G089700 Glycine max HOM05D000016 ORTHO05D000450 1.1e-07 60.5 85 38.8
MD06G1213300 Malus domestica HOM05D000016 ORTHO05D000450 1.1e-07 60.5 45 55.6
MD06G1214400 Malus domestica HOM05D000016 ORTHO05D000450 1.1e-07 60.5 45 55.6
QL10p024804 Quercus lobata HOM05D000016 ORTHO05D000450 1.1e-07 60.5 48 56.2
QL10p024903 Quercus lobata HOM05D000016 ORTHO05D000450 1.1e-07 60.5 48 56.2
QL93p0186_0045 Quercus lobata HOM05D000016 ORTHO05D000450 1.1e-07 60.5 48 56.2
RcHm_v2.0_Chr7g0185031 Rosa chinensis HOM05D000016 ORTHO05D000450 1.1e-07 60.5 48 52.1
RcHm_v2.0_Chr7g0185051 Rosa chinensis HOM05D000025 ORTHO05D000450 1.1e-07 60.5 44 59.1
MELO3C007799.2 Cucumis melo HOM05D000016 ORTHO05D000450 1.4e-07 60.1 46 58.7
Dinv01483 Davidia involucrata HOM05D000016 ORTHO05D000450 1.4e-07 60.1 48 54.2
TAR040G0006 Trochodendron aralioides HOM05D000025 ORTHO05D000450 1.4e-07 60.1 63 44.4
Duzib052G0309 Durio zibethinus HOM05D000016 ORTHO05D000450 1.8e-07 59.7 48 56.2
Prupe.5G219700 Prunus persica HOM05D000016 ORTHO05D000450 1.8e-07 59.7 48 56.2
VMungo0464G1392 Vigna mungo HOM05D000016 ORTHO05D000450 1.8e-07 59.7 57 43.9
Glyma.09G186200 Glycine max HOM05D000016 ORTHO05D000450 2.4e-07 59.3 48 58.3
Glyma.09G186300 Glycine max HOM05D000016 ORTHO05D000450 2.4e-07 59.3 48 58.3
Lj2g0006693 Lotus japonicus HOM05D000025 ORTHO05D000450 2.4e-07 59.3 90 38.9
Phvul.004G159800 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 2.4e-07 59.3 48 52.1
QL10p024370 Quercus lobata HOM05D000016 ORTHO05D000450 2.4e-07 59.3 48 56.2
QL10p024534 Quercus lobata HOM05D000016 ORTHO05D000450 2.4e-07 59.3 48 56.2
Dinv07346 Davidia involucrata HOM05D000016 ORTHO05D000450 3.1e-07 58.9 57 43.9
Gohir.D09G048000 Gossypium hirsutum HOM05D000016 ORTHO05D000450 3.1e-07 58.9 48 54.2
Gorai.006G062200 Gossypium raimondii HOM05D000016 ORTHO05D000450 3.1e-07 58.9 48 54.2
Thecc.03G032600 Theobroma cacao HOM05D000025 ORTHO05D000450 3.1e-07 58.9 48 54.2
Aqoxy3G00309 Aquilegia oxysepala HOM05D000016 ORTHO05D000450 4.1e-07 58.5 46 56.5
Dinv01482 Davidia involucrata HOM05D000016 ORTHO05D000450 4.1e-07 58.5 48 54.2
RcHm_v2.0_Chr2g0140651 Rosa chinensis HOM05D000025 ORTHO05D000450 4.1e-07 58.5 48 54.2
Aqoxy3G00327 Aquilegia oxysepala HOM05D000016 ORTHO05D000450 5.4e-07 58.2 46 54.3
CsaV3_6G045910 Cucumis sativus L. HOM05D000016 ORTHO05D000450 5.4e-07 58.2 46 54.3
Dinv01481 Davidia involucrata HOM05D000016 ORTHO05D000450 5.4e-07 58.2 48 52.1
Dinv02431 Davidia involucrata HOM05D000016 ORTHO05D000450 5.4e-07 58.2 44 56.8
Gohir.D09G048300 Gossypium hirsutum HOM05D000016 ORTHO05D000450 5.4e-07 58.2 75 37.3
Gorai.006G061800 Gossypium raimondii HOM05D000016 ORTHO05D000450 5.4e-07 58.2 75 37.3
MD06G1213800 Malus domestica HOM05D000016 ORTHO05D000450 5.4e-07 58.2 45 53.3
QL06p048855 Quercus lobata HOM05D000025 ORTHO05D000450 5.4e-07 58.2 57 43.9
Sabra12G0043700 Salix brachista HOM05D000016 ORTHO05D000450 5.4e-07 58.2 48 56.2
DCAR_019947 Daucus carota HOM05D000025 ORTHO05D000450 7.0e-07 57.8 48 50.0
Gohir.D01G052200 Gossypium hirsutum HOM05D000016 ORTHO05D000450 7.0e-07 57.8 105 36.2
Lj2g0014907 Lotus japonicus HOM05D000016 ORTHO05D000450 7.0e-07 57.8 90 37.8
Nn3g17793 Nelumbo nucifera HOM05D000025 ORTHO05D000450 7.0e-07 57.8 48 56.2
Potri.007G084700 Populus trichocarpa HOM05D000016 ORTHO05D000450 7.0e-07 57.8 48 56.2
Potri.007G085000 Populus trichocarpa HOM05D000016 ORTHO05D000450 7.0e-07 57.8 48 56.2
Prupe.5G219800 Prunus persica HOM05D000025 ORTHO05D000450 7.0e-07 57.8 48 56.2
Prupe.5G219900 Prunus persica HOM05D000016 ORTHO05D000450 7.0e-07 57.8 45 57.8
Sed0027844 Sechium edule HOM05D000016 ORTHO05D000450 7.0e-07 57.8 46 54.3
COL.COLO4_16285 Corchorus olitorius HOM05D000016 ORTHO05D000450 9.2e-07 57.4 48 52.1
Dinv07345 Davidia involucrata HOM05D000016 ORTHO05D000450 9.2e-07 57.4 48 52.1
Dinv09818 Davidia involucrata HOM05D000016 ORTHO05D000450 9.2e-07 57.4 44 56.8
Gohir.D01G052100 Gossypium hirsutum HOM05D000016 ORTHO05D000450 9.2e-07 57.4 90 38.9
Gorai.002G071900 Gossypium raimondii HOM05D000016 ORTHO05D000450 9.2e-07 57.4 90 38.9
Gorai.002G072000 Gossypium raimondii HOM05D000016 ORTHO05D000450 9.2e-07 57.4 105 36.2
MD14G1224800 Malus domestica HOM05D000016 ORTHO05D000450 9.2e-07 57.4 48 54.2
Potri.007G084200 Populus trichocarpa HOM05D000016 ORTHO05D000450 9.2e-07 57.4 90 35.6
Sed0004699 Sechium edule HOM05D000016 ORTHO05D000450 9.2e-07 57.4 46 54.3
arahy.Tifrunner.gnm1.ann1.AU8Y9Z Arachis hypogaea HOM05D000025 ORTHO05D000450 1.2e-06 57.0 84 39.3
Lj5A147G38 Lonicera japonica HOM05D000025 ORTHO05D000450 1.2e-06 57.0 48 50.0
VMungo0464G1273 Vigna mungo HOM05D000016 ORTHO05D000450 1.2e-06 57.0 48 54.2
Glyma.09G186500 Glycine max HOM05D000016 ORTHO05D000450 1.6e-06 56.6 48 52.1
Gohir.A01G064900 Gossypium hirsutum HOM05D000016 ORTHO05D000450 1.6e-06 56.6 90 38.9
Gohir.A09G047300 Gossypium hirsutum HOM05D000016 ORTHO05D000450 1.6e-06 56.6 75 36.0
Gohir.A13G023800 Gossypium hirsutum HOM05D000016 ORTHO05D000450 1.6e-06 56.6 48 50.0
Gohir.D01G052000 Gossypium hirsutum HOM05D000016 ORTHO05D000450 1.6e-06 56.6 90 38.9
Phvul.004G159900 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 1.6e-06 56.6 48 52.1
RcHm_v2.0_Chr7g0222431 Rosa chinensis HOM05D000016 ORTHO05D000450 1.6e-06 56.6 48 47.9
Aqoxy1G03847 Aquilegia oxysepala HOM05D000016 ORTHO05D000450 2.0e-06 56.2 46 54.3
Aqoxy7G03443 Aquilegia oxysepala HOM05D000025 ORTHO05D000450 2.0e-06 56.2 48 58.3
arahy.Tifrunner.gnm1.ann1.7PFL6Q Arachis hypogaea HOM05D000025 ORTHO05D000450 2.0e-06 56.2 63 39.7
arahy.Tifrunner.gnm1.ann1.TS7Z0X Arachis hypogaea HOM05D000025 ORTHO05D000450 2.0e-06 56.2 63 39.7
CSS0040786 Camellia sinensis var. sinensis HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 52.1
COL.COLO4_16670 Corchorus olitorius HOM05D000025 ORTHO05D000450 2.0e-06 56.2 45 51.1
DCAR_000986 Daucus carota HOM05D000016 ORTHO05D000450 2.0e-06 56.2 47 48.9
Dinv21977 Davidia involucrata HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 52.1
Dinv22631 Davidia involucrata HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 54.2
Glyma.07G089800 Glycine max HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 54.2
Gohir.A13G023600 Gossypium hirsutum HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 50.0
TWI81G0896 Tripterygium wilfordii HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 54.2
TWI81G0905 Tripterygium wilfordii HOM05D000016 ORTHO05D000450 2.0e-06 56.2 48 54.2
Aqoxy3G03941 Aquilegia oxysepala HOM05D000016 ORTHO05D000450 2.7e-06 55.8 35 74.3
CANSAT01G3148 Cannabis sativa HOM05D000016 ORTHO05D000450 2.7e-06 55.8 48 58.3
Cpa.g.sc21.211 Carica papaya HOM05D000016 ORTHO05D000450 2.7e-06 55.8 46 56.5
DCAR_005988 Daucus carota HOM05D000025 ORTHO05D000450 2.7e-06 55.8 48 54.2
DCAR_011549 Daucus carota HOM05D000025 ORTHO05D000450 2.7e-06 55.8 48 52.1
Gohir.A01G064940 Gossypium hirsutum HOM05D000025 ORTHO05D000450 2.7e-06 55.8 90 38.9
Phvul.004G159500 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 2.7e-06 55.8 48 52.1
TWI53G1628 Tripterygium wilfordii HOM05D000016 ORTHO05D000450 2.7e-06 55.8 48 52.1
Atru.chr4.293 Acer truncatum HOM05D000016 ORTHO05D000450 3.5e-06 55.5 47 53.2
DCAR_001002 Daucus carota HOM05D000016 ORTHO05D000450 3.5e-06 55.5 46 50.0
DCAR_011550 Daucus carota HOM05D000025 ORTHO05D000450 3.5e-06 55.5 48 52.1
Dinv21974 Davidia involucrata HOM05D000016 ORTHO05D000450 3.5e-06 55.5 46 54.3
Lalb_Chr07g0184881 Lupinus albus HOM05D000016 ORTHO05D000450 3.5e-06 55.5 91 37.4
Aqoxy3G00308 Aquilegia oxysepala HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
arahy.Tifrunner.gnm1.ann1.PQR1QR Arachis hypogaea HOM05D000016 ORTHO05D000450 4.5e-06 55.1 48 52.1
arahy.Tifrunner.gnm1.ann1.XD4R0P Arachis hypogaea HOM05D000016 ORTHO05D000450 4.5e-06 55.1 48 52.1
Dinv09794 Davidia involucrata HOM05D000016 ORTHO05D000450 4.5e-06 55.1 45 53.3
Dinv21975 Davidia involucrata HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
Dinv21980 Davidia involucrata HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 54.3
Dinv22636 Davidia involucrata HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 54.3
FvH4_1g21960 Fragaria vesca HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
FvH4_7g15050 Fragaria vesca HOM05D000016 ORTHO05D000450 4.5e-06 55.1 45 51.1
FAN19G0759 Fragaria x ananassa HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
FAN23G3105 Fragaria x ananassa HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
FAN26G0990 Fragaria x ananassa HOM05D000016 ORTHO05D000450 4.5e-06 55.1 46 52.2
Manes.01G010866 Manihot esculenta HOM05D000016 ORTHO05D000450 4.5e-06 55.1 48 52.1
Manes.01G012564 Manihot esculenta HOM05D000016 ORTHO05D000450 4.5e-06 55.1 48 52.1
Phvul.004G159600 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 4.5e-06 55.1 48 52.1
RcHm_v2.0_Chr1g0345321 Rosa chinensis HOM05D000016 ORTHO05D000450 4.5e-06 55.1 57 43.9
RcHm_v2.0_Chr2g0115981 Rosa chinensis HOM05D000016 ORTHO05D000450 4.5e-06 55.1 57 42.1
Sed0004534 Sechium edule HOM05D000016 ORTHO05D000450 4.5e-06 55.1 118 30.5
TWI53G1855 Tripterygium wilfordii HOM05D000025 ORTHO05D000450 4.5e-06 55.1 48 50.0
TWI77G0727 Tripterygium wilfordii HOM05D000016 ORTHO05D000450 4.5e-06 55.1 44 54.5
CANSAT78G1303 Cannabis sativa HOM05D000016 ORTHO05D000450 5.9e-06 54.7 46 47.8
FAN28G2263 Fragaria x ananassa HOM05D000025 ORTHO05D000450 5.9e-06 54.7 46 52.2
FAN28G2267 Fragaria x ananassa HOM05D000025 ORTHO05D000450 5.9e-06 54.7 46 52.2
Gorai.013G025300 Gossypium raimondii HOM05D000025 ORTHO05D000450 5.9e-06 54.7 48 47.9
Lj2g0016779 Lotus japonicus HOM05D000016 ORTHO05D000450 5.9e-06 54.7 48 50.0
Manes.01G011432 Manihot esculenta HOM05D000016 ORTHO05D000450 5.9e-06 54.7 48 52.1
Manes.01G013130 Manihot esculenta HOM05D000016 ORTHO05D000450 5.9e-06 54.7 48 52.1
GSVIVG01008261001 Vitis vinifera HOM05D000025 ORTHO05D000450 5.9e-06 54.7 48 50.0
Ciclev10027549m.g Citrus clementina HOM05D000016 ORTHO05D000450 7.7e-06 54.3 48 50.0
DCAR_000992 Daucus carota HOM05D000016 ORTHO05D000450 7.7e-06 54.3 44 50.0
DCAR_002626 Daucus carota HOM05D000025 ORTHO05D000450 7.7e-06 54.3 48 50.0
DCAR_011548 Daucus carota HOM05D000025 ORTHO05D000450 7.7e-06 54.3 48 50.0
DCAR_028151 Daucus carota HOM05D000016 ORTHO05D000450 7.7e-06 54.3 45 53.3
Gorai.006G081800 Gossypium raimondii HOM05D000025 ORTHO05D000450 7.7e-06 54.3 48 54.2
Phvul.002G263700 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 7.7e-06 54.3 95 32.6
Phvul.002G263900 Phaseolus vulgaris HOM05D000016 ORTHO05D000450 7.7e-06 54.3 90 34.4
Prupe.6G176500 Prunus persica HOM05D000016 ORTHO05D000450 7.7e-06 54.3 46 52.2
RcHm_v2.0_Chr0c12g0499591 Rosa chinensis HOM05D000016 ORTHO05D000450 7.7e-06 54.3 44 54.5
TWI75G1841 Tripterygium wilfordii HOM05D000016 ORTHO05D000450 7.7e-06 54.3 45 53.3


User provided reference genes

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