Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 0.0e+00 2536.9 1331 100.0
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.3e-243 845.9 1379 44.2
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 9.5e-219 765.0 1387 42.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.9e-195 687.6 1369 38.9
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 5.1e-180 636.3 1336 38.1
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.8e-178 629.8 1388 37.4
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.3e-178 629.4 1388 37.5
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.2e-158 562.8 1392 35.5
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.2e-149 535.4 1331 33.9
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.4e-145 521.9 1411 34.4
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.6e-144 518.5 1405 32.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 4.5e-144 516.9 1225 35.2
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 7.7e-144 516.2 1162 35.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 7.2e-142 509.6 1388 35.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.7e-138 497.3 1318 33.1
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.5e-136 490.3 1343 32.7
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.5e-134 485.3 1238 34.7
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.9e-134 485.0 1534 31.4
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.8e-129 468.4 1289 33.2
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.4e-129 468.0 1387 33.2
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 5.9e-128 463.4 1399 31.5
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-123 448.7 1196 34.2
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.2e-122 444.9 1419 33.1
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 4.9e-122 443.7 1402 31.7
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 1.3e-119 435.6 1465 31.5
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.0e-119 434.5 1453 32.1
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-118 432.6 1373 32.6
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.5e-118 432.2 1452 31.4
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 5.6e-118 430.3 1463 30.8
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.8e-117 427.9 1414 31.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 8.9e-116 422.9 1393 32.2
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 4.1e-113 414.1 1448 32.6
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.7e-111 408.7 1387 31.4
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.7e-111 408.7 1386 31.5
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 2.3e-111 408.3 1349 32.8
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.0e-111 407.9 1389 31.4
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.5e-110 405.6 1311 32.0
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.9e-110 405.2 1396 31.9
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 7.6e-107 393.3 1536 30.3
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 9.9e-107 392.9 1361 30.7
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 2.9e-106 391.3 1349 30.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.4e-106 390.2 1395 30.0
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 8.3e-106 389.8 1384 31.1
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.7e-103 382.1 1406 29.9
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 4.3e-102 377.5 1437 31.0
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 8.1e-101 373.2 1473 30.9
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 4.0e-100 370.9 1451 32.6
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 5.2e-100 370.5 817 37.7
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 5.2e-100 370.5 1354 30.5
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 8.9e-100 369.8 1310 31.0
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.6e-99 368.2 1414 30.5
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 5.4e-97 360.5 1397 29.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 7.1e-97 360.1 835 37.1
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.1e-96 358.6 1472 30.4
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 2.7e-96 358.2 1425 29.3
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 7.8e-96 356.7 1362 31.3
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.3e-95 355.9 1400 30.2
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.0e-95 354.8 1361 31.2
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 6.6e-95 353.6 1406 28.8
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.0e-91 342.0 1377 30.4
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.9e-90 338.2 1429 29.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.1e-89 336.3 1398 29.3
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.9e-89 335.5 542 42.3
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.6e-85 322.4 879 33.9
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-82 311.6 1417 29.2
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.3e-81 306.6 1399 29.7
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 9.6e-78 296.6 1423 28.5
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.4e-76 292.0 926 32.6
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.2e-73 281.6 1442 28.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.2e-72 279.6 297 52.2
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.6e-64 251.1 1395 26.8
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.5e-54 218.8 1128 28.1
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.3e-54 218.0 677 33.1
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.8e-52 212.6 1468 26.8
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.6e-48 199.5 672 32.1
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 9.7e-46 190.3 721 30.7
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.7e-45 189.5 1218 26.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.2e-45 189.1 678 31.7
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 5.9e-43 181.0 1382 25.3
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.5e-41 175.6 452 35.6
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.1e-38 166.8 1419 25.7
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 1.5e-38 166.4 1485 25.3
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.0e-38 166.0 717 28.9
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.8e-36 159.5 366 36.3
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 3.5e-35 155.2 1058 25.4
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.7e-34 152.9 628 30.3
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.0e-31 143.7 1513 24.1
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.8e-31 142.9 811 26.8
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.0e-31 141.7 275 35.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.4e-30 138.7 1155 25.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 2.2e-29 136.0 924 25.4
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.6e-27 129.8 1514 23.8
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.7e-27 129.0 1159 26.5
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 5.5e-25 121.3 558 30.6
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.2e-24 120.2 492 31.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.2e-24 120.2 776 25.8
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.8e-23 116.3 487 31.6
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 5.2e-23 114.8 495 31.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 7.5e-22 110.9 342 32.2
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.8e-22 110.5 808 26.2
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 5.4e-20 104.8 448 29.5
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 7.0e-20 104.4 540 27.4
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 7.0e-20 104.4 1496 23.0
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 7.0e-20 104.4 893 24.7
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 9.2e-20 104.0 488 30.1
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.5e-19 102.1 464 30.6
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 5.9e-19 101.3 524 29.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-18 100.1 623 27.4
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 2.3e-18 99.4 461 31.2
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 3.8e-18 98.6 1367 25.0
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.0e-18 98.2 357 32.2
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.1e-17 97.1 286 33.9
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 4.3e-17 95.1 672 27.1
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 7.3e-17 94.4 366 31.1
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 9.5e-17 94.0 461 30.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.7e-16 91.7 855 23.7
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.1e-16 91.3 454 27.8
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.0e-15 90.5 137 40.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.9e-13 82.4 525 26.5
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.4e-12 80.1 323 31.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.4e-12 78.2 1388 22.6
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.7e-10 73.2 183 31.7
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-09 70.1 218 33.0
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.1e-08 66.2 694 23.9
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 3.6e-08 65.5 361 27.4
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 1.8e-07 63.2 206 36.4
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.3e-07 62.8 471 28.2
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 3.1e-07 62.4 341 29.9
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 8.9e-07 60.8 478 28.9
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.6e-06 59.3 533 25.0
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.8e-06 58.2 594 26.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.8e-06 57.4 876 25.6


User provided reference genes

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