Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.5e-164 582.8 295 100.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 7.2e-127 457.6 302 80.1
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.7e-121 439.1 302 77.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 4.5e-121 438.3 303 75.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 7.7e-121 437.6 303 75.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.5e-119 433.3 305 75.1
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.9e-119 433.0 301 74.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-119 432.6 301 76.7
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 4.2e-119 431.8 299 75.9
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 6.1e-118 427.9 306 73.9
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 6.1e-118 427.9 300 75.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-117 426.8 304 72.7
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.2e-117 424.9 300 75.0
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.2e-117 424.9 304 72.4
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 5.2e-117 424.9 303 74.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 5.2e-117 424.9 302 74.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 5.2e-117 424.9 302 74.8
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 8.9e-117 424.1 301 75.7
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.5e-116 423.3 304 72.0
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.4e-116 421.8 302 75.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.8e-116 420.6 301 74.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 4.9e-115 418.3 299 74.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.4e-114 416.8 303 73.3
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.4e-114 416.8 299 72.9
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.8e-114 416.4 298 73.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.4e-114 416.0 300 72.7
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.4e-114 416.0 293 75.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.4e-114 414.8 303 72.9
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.0e-113 412.9 302 72.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.7e-113 412.5 296 73.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.5e-113 412.1 305 72.1
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.5e-113 412.1 298 73.8
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.8e-113 411.0 304 73.0
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.9e-112 409.1 304 73.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.8e-112 408.7 299 73.9
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.8e-112 408.7 299 71.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 8.6e-112 407.5 297 71.4
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.1e-111 407.1 302 72.2
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.1e-111 407.1 301 72.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-111 406.8 297 71.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.3e-111 405.6 299 70.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.3e-111 405.2 297 71.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.2e-110 403.7 293 71.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.6e-110 403.3 295 71.2
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.6e-110 403.3 299 70.6
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 6.1e-110 401.4 295 71.9
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 6.1e-110 401.4 305 73.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.8e-109 399.8 302 72.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.8e-109 399.8 299 71.6
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.3e-109 399.4 295 71.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.1e-109 399.1 291 71.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.1e-109 399.1 313 68.1
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 5.2e-109 398.3 302 71.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 5.2e-109 398.3 295 70.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 8.9e-109 397.5 301 71.4
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.4e-108 395.6 302 72.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.4e-108 395.2 316 67.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 4.4e-108 395.2 298 70.5
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 4.4e-108 395.2 300 70.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 9.8e-108 394.0 295 70.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.3e-107 393.7 299 69.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-107 393.7 299 69.9
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.7e-107 393.3 294 70.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.2e-107 392.9 296 70.3
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.2e-107 392.9 295 69.5
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.7e-107 392.1 290 72.4
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-106 390.6 299 69.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.4e-106 390.2 316 66.5
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.1e-106 388.7 299 70.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.4e-106 388.3 296 70.3
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.6e-105 386.7 293 69.3
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-105 386.3 313 67.1
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.5e-105 385.6 299 70.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.0e-105 384.8 297 69.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 7.8e-105 384.4 297 69.7
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-104 382.9 294 69.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.3e-104 382.9 305 70.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.9e-104 382.1 296 69.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.1e-103 380.6 273 72.5
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.5e-103 380.2 252 77.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.9e-103 379.8 298 68.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.9e-103 379.8 291 69.8
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 9.5e-103 377.5 296 68.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 4.7e-102 375.2 350 63.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.1e-101 374.0 295 67.8
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.4e-101 373.6 267 74.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 4.0e-101 372.1 287 70.0
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 6.8e-101 371.3 285 68.1
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 6.8e-101 371.3 263 72.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-100 370.5 263 72.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.5e-100 370.2 288 69.8
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.5e-100 370.2 262 72.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-100 369.8 261 73.6
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.6e-100 369.4 296 67.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 5.8e-100 368.2 299 66.9
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.9e-99 365.9 262 72.5
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 8.3e-99 364.4 298 67.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.9e-98 363.2 295 67.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.1e-98 362.1 271 70.5
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.0e-98 361.3 295 67.5
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-97 360.5 279 69.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-97 360.5 216 82.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.5e-97 359.0 279 69.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.1e-95 354.0 296 65.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.3e-95 352.4 312 62.5
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.7e-94 348.6 284 63.7
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 8.1e-94 347.8 259 72.2
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.4e-93 347.1 281 66.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.8e-93 346.7 218 81.2
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 8.9e-93 344.4 225 77.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 9.9e-92 340.9 248 73.4
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-91 340.5 248 73.4
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-91 339.7 248 73.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.2e-91 339.7 278 65.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.9e-91 339.3 261 72.8
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.6e-89 333.6 226 75.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.0e-88 329.3 225 76.9
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.1e-88 328.6 295 61.4
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.5e-87 327.0 226 74.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.7e-86 322.0 295 60.7
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-81 307.4 288 59.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.8e-81 304.7 180 85.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-79 300.4 196 77.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.6e-76 289.7 215 71.6
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 5.8e-76 288.5 230 68.7
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.7e-75 287.0 252 59.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-74 284.3 216 71.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-74 283.9 180 78.9
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.4e-74 283.1 306 49.7
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.2e-73 280.8 314 48.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.3e-72 277.3 244 62.3
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.1e-70 268.1 174 74.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.8e-69 266.9 298 49.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.8e-69 266.9 239 59.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 6.9e-69 265.0 244 57.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 4.5e-68 262.3 281 52.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.9e-67 259.6 178 70.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.2e-66 256.1 253 59.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.0e-65 251.9 207 60.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-62 243.8 161 77.0
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.6e-57 227.3 137 81.0
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.9e-55 220.3 202 60.9
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-50 203.8 254 53.1
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.8e-48 197.2 221 45.2
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.2e-42 176.4 129 70.5
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.9e-40 169.5 174 58.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 3.3e-39 166.4 151 62.3
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.0e-35 152.5 120 68.3
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-32 144.4 83 83.1
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.1e-29 132.9 82 80.5
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 7.7e-28 128.6 75 81.3
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 7.2e-26 122.1 64 89.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-17 94.7 66 74.2
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.0e-15 87.4 108 47.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 8.3e-14 82.0 83 55.4
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.2e-09 68.2 38 86.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 6.8e-08 62.4 35 85.7
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 8.8e-08 62.0 98 43.9


User provided reference genes

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