Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.5e-74 282.7 135 100.0
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.4e-21 106.7 116 49.1
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 6.0e-20 101.3 107 53.3
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 3.3e-18 95.5 110 47.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.3e-17 93.6 113 46.9
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.1e-17 92.8 111 43.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 6.9e-16 87.8 108 45.4
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.2e-15 87.0 112 45.5
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.6e-15 84.3 78 52.6
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.2e-14 82.8 113 40.7
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.8e-14 82.0 66 47.0
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.4e-14 81.3 111 39.6
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.1e-13 80.5 72 54.2
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.1e-13 80.5 74 59.5
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.1e-13 80.5 74 52.7
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.9e-13 79.7 70 57.1
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.9e-13 79.7 81 48.1
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.9e-13 79.7 102 41.2
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.4e-13 79.3 88 51.1
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 3.2e-13 79.0 90 45.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 7.1e-13 77.8 116 41.4
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 7.1e-13 77.8 103 45.6
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.3e-13 77.4 73 56.2
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 9.3e-13 77.4 81 46.9
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.2e-12 77.0 116 40.5
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.2e-12 77.0 81 48.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.6e-12 76.6 76 50.0
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-12 76.6 78 46.2
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.6e-12 76.6 83 45.8
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.1e-12 76.3 73 49.3
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-12 76.3 67 50.7
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.7e-12 75.9 77 46.8
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 2.7e-12 75.9 76 48.7
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 3.5e-12 75.5 79 46.8
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 3.5e-12 75.5 81 50.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.5e-12 75.5 110 41.8
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 3.5e-12 75.5 121 40.5
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-12 75.1 104 41.3
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 4.6e-12 75.1 77 45.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 6.0e-12 74.7 107 43.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 6.0e-12 74.7 72 50.0
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.0e-12 74.7 70 54.3
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.9e-12 74.3 79 39.2
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 7.9e-12 74.3 76 46.1
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.0e-11 73.9 73 53.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.3e-11 73.6 76 48.7
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.3e-11 73.6 92 42.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 1.3e-11 73.6 76 47.4
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.3e-11 72.8 83 36.1
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-11 72.4 79 38.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 3.0e-11 72.4 110 38.2
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 3.0e-11 72.4 80 47.5
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 3.0e-11 72.4 87 47.1
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.0e-11 72.4 75 46.7
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.9e-11 72.0 60 50.0
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.9e-11 72.0 80 47.5
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 3.9e-11 72.0 75 48.0
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.1e-11 71.6 78 46.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 5.1e-11 71.6 73 46.6
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.1e-11 71.6 58 51.7
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 5.1e-11 71.6 88 37.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.7e-11 71.2 77 45.5
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 8.7e-11 70.9 75 46.7
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.7e-11 70.9 78 46.2
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.7e-11 70.9 78 46.2
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 8.7e-11 70.9 70 52.9
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.1e-10 70.5 99 37.4
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.5e-10 70.1 84 40.5
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.5e-10 70.1 60 53.3
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-10 69.7 84 40.5
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.5e-10 69.3 76 46.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.5e-10 69.3 100 42.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-10 69.3 100 42.0
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-10 69.3 100 42.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-10 69.3 100 42.0
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-10 69.3 84 40.5
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 3.3e-10 68.9 74 54.1
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 4.3e-10 68.6 82 43.9
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 4.3e-10 68.6 75 49.3
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 4.3e-10 68.6 110 37.3
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 5.6e-10 68.2 116 37.1
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.6e-10 68.2 82 46.3
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.6e-10 68.2 80 42.5
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 5.6e-10 68.2 80 45.0
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.6e-10 68.2 98 41.8
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 9.6e-10 67.4 75 44.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.3e-09 67.0 70 42.9
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.3e-09 67.0 81 42.0
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-09 67.0 82 45.1
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 2.1e-09 66.2 77 41.6
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.8e-09 65.9 89 41.6
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.8e-09 65.9 72 44.4
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-09 65.9 99 36.4
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.8e-09 65.9 58 53.4
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.7e-09 65.5 67 43.3
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.7e-09 65.5 84 44.0
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 4.8e-09 65.1 90 44.4
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.8e-09 65.1 62 50.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 8.2e-09 64.3 71 42.3
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.2e-09 64.3 90 41.1
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 8.2e-09 64.3 88 45.5
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.1e-08 63.9 76 43.4
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.4e-08 63.5 70 47.1
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-08 63.5 61 54.1
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.8e-08 63.2 65 43.1
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 1.8e-08 63.2 92 44.6
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 1.8e-08 63.2 96 41.7
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.1e-08 62.4 82 43.9
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 3.1e-08 62.4 109 34.9
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 3.1e-08 62.4 109 34.9
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.0e-08 62.0 83 43.4
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.3e-08 61.6 84 42.9
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 5.3e-08 61.6 72 41.7
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 5.3e-08 61.6 113 33.6
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 6.9e-08 61.2 76 42.1
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.9e-08 61.2 93 40.9
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 6.9e-08 61.2 76 43.4
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 9.0e-08 60.8 73 47.9
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.2e-07 60.5 60 51.7
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-07 60.5 69 44.9
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-07 60.5 69 42.0
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-07 60.5 67 41.8
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.0e-07 59.7 74 43.2
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 2.6e-07 59.3 74 43.2
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 3.4e-07 58.9 79 41.8
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.5e-07 58.5 56 50.0
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.5e-07 58.5 58 48.3
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 4.5e-07 58.5 79 40.5
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 5.8e-07 58.2 87 34.5
Lalb_Chr03g0027791 Lupinus albus HOM05D014522 ORTHO05D004438 5.8e-07 58.2 68 42.6
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 5.8e-07 58.2 65 43.1
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 7.6e-07 57.8 71 40.8
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 7.6e-07 57.8 72 43.1
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.0e-06 57.4 64 42.2
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.3e-06 57.0 60 50.0
Aqoxy1G01037 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.7e-06 56.6 56 50.0
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 1.7e-06 56.6 55 56.4
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-06 56.2 81 39.5
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 2.9e-06 55.8 55 56.4
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 2.9e-06 55.8 55 56.4
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.9e-06 55.8 71 40.8
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.9e-06 55.8 58 50.0
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 3.8e-06 55.5 55 56.4
A06p05240 Brassica napus HOM05D010843 ORTHO05D012975 4.9e-06 55.1 75 42.7
BraA06t23731Z Brassica rapa HOM05D010843 ORTHO05D012975 4.9e-06 55.1 75 42.7
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 4.9e-06 55.1 55 56.4
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 6.5e-06 54.7 88 34.1
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 6.5e-06 54.7 100 34.0
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 8.4e-06 54.3 60 46.7
HPP92_025766 Vanilla planifolia HOM05D030582 ORTHO05D004438 8.4e-06 54.3 82 41.5


User provided reference genes

Program Settings