Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01218 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 2.7e-30 134.8 75 100.0
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 2.6e-12 75.1 82 61.0
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 5.7e-12 73.9 80 61.2
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 7.5e-12 73.6 82 58.5
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 7.5e-12 73.6 82 58.5
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 9.7e-12 73.2 80 61.2
GSVIVG01011278001 Vitis vinifera HOM05D003360 ORTHO05D003759 1.7e-11 72.4 78 60.3
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 4.8e-11 70.9 76 60.5
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 6.3e-11 70.5 83 55.4
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 1.1e-10 69.7 83 55.4
Duzib128G1587 Durio zibethinus HOM05D003360 ORTHO05D003759 1.1e-10 69.7 69 62.3
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 1.1e-10 69.7 75 60.0
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 1.1e-10 69.7 79 60.8
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 1.1e-10 69.7 74 55.4
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 1.4e-10 69.3 80 58.8
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 1.4e-10 69.3 78 60.3
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.4e-10 69.3 75 57.3
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.4e-10 69.3 75 57.3
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.8e-10 68.9 75 56.0
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.8e-10 68.9 77 62.3
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.4e-10 68.6 51 68.6
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 3.1e-10 68.2 72 59.7
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 5.3e-10 67.4 48 75.0
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 5.3e-10 67.4 76 60.5
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 5.3e-10 67.4 78 59.0
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 5.3e-10 67.4 79 58.2
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 5.3e-10 67.4 72 59.7
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 7.0e-10 67.0 51 66.7
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 7.0e-10 67.0 51 66.7
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 1.2e-09 66.2 64 59.4
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.2e-09 66.2 77 58.4
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 1.6e-09 65.9 51 66.7
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 1.6e-09 65.9 51 66.7
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 1.6e-09 65.9 77 55.8
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 2.0e-09 65.5 58 63.8
BNapus_Darmor_BZH_scaffold_239p00010 Brassica napus HOM05D003360 ORTHO05D003759 2.0e-09 65.5 67 58.2
C04p65310 Brassica napus HOM05D003360 ORTHO05D003759 2.0e-09 65.5 67 58.2
BolC4t28009H Brassica oleracea HOM05D003360 ORTHO05D003759 2.0e-09 65.5 65 58.5
BraA04t18273Z Brassica rapa HOM05D003360 ORTHO05D003759 2.0e-09 65.5 67 58.2
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 2.0e-09 65.5 58 63.8
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 2.0e-09 65.5 80 56.2
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 2.0e-09 65.5 78 53.8
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 2.7e-09 65.1 65 55.4
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 2.7e-09 65.1 48 70.8
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 2.7e-09 65.1 48 70.8
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 2.7e-09 65.1 48 70.8
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 2.7e-09 65.1 73 60.3
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 2.7e-09 65.1 73 60.3
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 2.7e-09 65.1 73 60.3
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 3.5e-09 64.7 77 55.8
Thhalv10017499m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 3.5e-09 64.7 67 55.2
Lsat_1_v5_gn_2_104661 Lactuca sativa HOM05D001901 ORTHO05D001850 3.5e-09 64.7 73 57.5
Psat6g080880 Pisum sativum HOM05D003360 ORTHO05D003759 3.5e-09 64.7 56 64.3
TAR636G1359 Trochodendron aralioides HOM05D003360 ORTHO05D003759 3.5e-09 64.7 76 55.3
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 4.5e-09 64.3 64 57.8
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 4.5e-09 64.3 64 57.8
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 4.5e-09 64.3 64 57.8
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 4.5e-09 64.3 64 57.8
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 4.5e-09 64.3 77 57.1
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 4.5e-09 64.3 72 56.9
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 4.5e-09 64.3 72 56.9
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 4.5e-09 64.3 72 56.9
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 4.5e-09 64.3 76 53.9
Aqoxy4G02806 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 5.9e-09 63.9 76 56.6
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 5.9e-09 63.9 64 59.4
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 5.9e-09 63.9 64 59.4
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 5.9e-09 63.9 64 59.4
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 5.9e-09 63.9 71 56.3
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 5.9e-09 63.9 72 56.9
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 5.9e-09 63.9 51 64.7
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 5.9e-09 63.9 72 56.9
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 5.9e-09 63.9 72 56.9
BcaB06g28928 Brassica carinata HOM05D003360 ORTHO05D003759 7.7e-09 63.5 70 54.3
BcaC02g07614 Brassica carinata HOM05D003360 ORTHO05D003759 7.7e-09 63.5 51 64.7
BcaC02g07615 Brassica carinata HOM05D003360 ORTHO05D003759 7.7e-09 63.5 51 64.7
A05p09550 Brassica napus HOM05D003360 ORTHO05D003759 7.7e-09 63.5 51 64.7
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 1.0e-08 63.2 66 57.6
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 1.0e-08 63.2 48 68.8
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.0e-08 63.2 74 58.1
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 1.0e-08 63.2 72 55.6
Aa31LG5G21450 Aethionema arabicum HOM05D003360 ORTHO05D003759 1.3e-08 62.8 46 67.4
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 1.3e-08 62.8 47 68.1
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 1.3e-08 62.8 46 73.9
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 1.3e-08 62.8 46 73.9
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 64 56.2
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 1.3e-08 62.8 64 56.2
Cfa011263 Carpinus fangiana HOM05D003360 ORTHO05D003759 1.3e-08 62.8 74 55.4
Haze_02515 Corylus avellana HOM05D003360 ORTHO05D003759 1.3e-08 62.8 74 55.4
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 1.3e-08 62.8 77 57.1
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.3e-08 62.8 74 55.4
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 1.7e-08 62.4 76 52.6
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 1.7e-08 62.4 76 52.6
A04p27810 Brassica napus HOM05D003360 ORTHO05D003759 2.2e-08 62.0 49 65.3
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 2.2e-08 62.0 48 66.7
CARHR130590 Cardamine hirsuta HOM05D003360 ORTHO05D003759 2.2e-08 62.0 49 63.3
DCAR_009156 Daucus carota HOM05D003360 ORTHO05D003759 2.2e-08 62.0 79 48.1
Thhalv10011130m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 2.2e-08 62.0 66 51.5
Glyma.19G194100 Glycine max HOM05D003360 ORTHO05D003759 2.2e-08 62.0 77 58.4
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 2.2e-08 62.0 74 54.1
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 2.2e-08 62.0 57 59.6
BcaC02g11743 Brassica carinata HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 68.1
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 2.9e-08 61.6 48 66.7
C04p11810 Brassica napus HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 68.1
BolC4t22830H Brassica oleracea HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 68.1
BcaB01g03851 Brassica carinata HOM05D003360 ORTHO05D003759 3.8e-08 61.2 54 57.4
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 3.8e-08 61.2 73 53.4
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 3.8e-08 61.2 46 73.9
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 3.8e-08 61.2 68 55.9
Hma1.2p1_0356F.1_g134050 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 3.8e-08 61.2 75 52.0
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 3.8e-08 61.2 74 56.8
BcaC01g05667 Brassica carinata HOM05D003360 ORTHO05D003759 5.0e-08 60.8 70 51.4
A03p20030 Brassica napus HOM05D003360 ORTHO05D003759 5.0e-08 60.8 70 51.4
BolC3t14744H Brassica oleracea HOM05D003360 ORTHO05D003759 5.0e-08 60.8 70 51.4
BraA03t11254Z Brassica rapa HOM05D003360 ORTHO05D003759 5.0e-08 60.8 70 51.4
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 5.0e-08 60.8 64 60.9
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 5.0e-08 60.8 80 45.0
Nitab4.5_0001725g0010 Nicotiana tabacum HOM05D003360 ORTHO05D003759 5.0e-08 60.8 77 51.9
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 6.5e-08 60.5 51 62.7
BraA05t19908Z Brassica rapa HOM05D003360 ORTHO05D003759 6.5e-08 60.5 47 66.0
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 6.5e-08 60.5 76 50.0
Sabra10G0185900 Salix brachista HOM05D001901 ORTHO05D001850 6.5e-08 60.5 75 53.3
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 8.5e-08 60.1 49 65.3
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 8.5e-08 60.1 49 65.3
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 8.5e-08 60.1 45 71.1
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 8.5e-08 60.1 79 53.2
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 8.5e-08 60.1 76 55.3
Aqoxy5G00910 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 1.1e-07 59.7 63 58.7
CSS0011540 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 1.1e-07 59.7 67 56.7
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 1.1e-07 59.7 74 54.1
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 1.1e-07 59.7 51 62.7
Glyma.03G194300 Glycine max HOM05D003360 ORTHO05D003759 1.1e-07 59.7 78 56.4
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 1.1e-07 59.7 78 50.0
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 1.5e-07 59.3 77 54.5
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 1.5e-07 59.3 80 50.0
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 1.5e-07 59.3 78 53.8
TPR.G19518 Trifolium pratense HOM05D003360 ORTHO05D003759 1.5e-07 59.3 74 55.4
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 1.5e-07 59.3 45 68.9
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 1.9e-07 58.9 77 54.5
Haze_05346 Corylus avellana HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 71.1
Gohir.D01G196550 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.9e-07 58.9 74 55.4
Gorai.002G240800 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.9e-07 58.9 74 55.4
TWI74G1584 Tripterygium wilfordii HOM05D003360 ORTHO05D003759 1.9e-07 58.9 65 56.9
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 1.9e-07 58.9 82 56.1
HanXRQChr13g0402021 Helianthus annuus HOM05D003360 ORTHO05D003759 2.5e-07 58.5 68 48.5
Nitab4.5_0002400g0080 Nicotiana tabacum HOM05D003360 ORTHO05D003759 2.5e-07 58.5 76 48.7
Os04g0411200 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 63.3
Potri.008G021766 Populus trichocarpa HOM05D003360 ORTHO05D003759 2.5e-07 58.5 51 62.7
Potri.010G237600 Populus trichocarpa HOM05D003360 ORTHO05D003759 2.5e-07 58.5 75 52.0
Sopen09g004380 Solanum pennellii HOM05D003360 ORTHO05D003759 2.5e-07 58.5 51 60.8
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 2.5e-07 58.5 51 60.8
C03p23480 Brassica napus HOM05D003360 ORTHO05D003759 3.2e-07 58.2 70 50.0
Medtr7g104410 Medicago truncatula HOM05D003360 ORTHO05D003759 5.5e-07 57.4 77 51.9
Thecc.10G106800 Theobroma cacao HOM05D003360 ORTHO05D003759 5.5e-07 57.4 75 50.7
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 7.2e-07 57.0 69 55.1
Oeu061778.1 Olea europaea HOM05D003360 ORTHO05D003759 9.4e-07 56.6 77 48.1
Zm00001eb242710 Zea mays HOM05D003360 ORTHO05D003759 9.4e-07 56.6 47 66.0
Ciclev10033849m.g Citrus clementina HOM05D003360 ORTHO05D003759 1.2e-06 56.2 73 50.7
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 1.2e-06 56.2 72 51.4
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.2e-06 56.2 80 53.8
Gohir.A01G207150 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.6e-06 55.8 74 54.1
Peaxi162Scf00040g10112 Petunia axillaris HOM05D003360 ORTHO05D003759 1.6e-06 55.8 76 51.3
Psat3g033920 Pisum sativum HOM05D003360 ORTHO05D003759 2.1e-06 55.5 72 52.8
Prupe.2G079600 Prunus persica HOM05D003360 ORTHO05D003759 2.1e-06 55.5 75 49.3
Solyc11g007100.1 Solanum lycopersicum HOM05D003360 ORTHO05D003759 2.1e-06 55.5 63 55.6
Sopen11g003020 Solanum pennellii HOM05D003360 ORTHO05D003759 2.1e-06 55.5 63 55.6
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 2.1e-06 55.5 74 48.6
CSS0023349 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 2.7e-06 55.1 49 63.3
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 2.7e-06 55.1 79 46.8
Lalb_Chr25g0288531 Lupinus albus HOM05D003360 ORTHO05D003759 3.6e-06 54.7 67 53.7
Nitab4.5_0001437g0150 Nicotiana tabacum HOM05D003360 ORTHO05D003759 3.6e-06 54.7 63 55.6
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 6.1e-06 53.9 79 48.1
Gohir.D12G091360 Gossypium hirsutum HOM05D003360 ORTHO05D003759 6.1e-06 53.9 75 49.3
Gorai.008G098900 Gossypium raimondii HOM05D003360 ORTHO05D003759 6.1e-06 53.9 75 49.3
SGA_v2.0_scaffold35G14071 Striga asiatica HOM05D001616 ORTHO05D003701 8.0e-06 53.5 63 49.2


User provided reference genes

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