Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.7e-294 1014.6 517 100.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.2e-225 786.6 524 77.5
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.2e-222 776.5 525 76.8
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.2e-211 739.2 529 72.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.8e-211 738.8 533 72.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.6e-209 733.0 520 72.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 4.5e-209 731.5 523 73.6
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 5.9e-209 731.1 520 72.3
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.0e-208 730.3 526 71.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.9e-208 728.8 523 71.5
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.9e-208 728.8 520 72.5
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.8e-208 728.4 522 72.4
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.5e-207 725.7 519 72.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.1e-206 722.6 521 71.8
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.8e-206 722.2 537 71.3
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.7e-206 721.5 521 71.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.4e-205 719.9 521 72.9
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.6e-204 715.7 541 70.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 4.4e-204 714.9 527 71.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-203 713.0 517 70.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.2e-203 712.6 492 73.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-202 710.3 530 69.4
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-202 709.9 514 70.8
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.4e-202 709.9 527 70.2
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.4e-202 709.1 525 69.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 4.1e-202 708.4 434 81.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-201 705.3 514 70.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.5e-201 705.3 524 69.8
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.5e-201 705.3 524 69.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.8e-201 704.1 528 69.3
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 3.0e-200 702.2 525 69.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.9e-200 701.8 525 70.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 5.0e-200 701.4 525 69.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 8.6e-200 700.7 535 68.6
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.5e-199 699.1 544 67.5
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 7.3e-199 697.6 544 67.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.6e-198 696.4 453 77.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.6e-198 696.4 526 71.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.7e-198 694.9 531 67.6
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.0e-197 693.7 525 69.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 2.3e-197 692.6 468 76.3
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 6.8e-197 691.0 518 69.9
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 8.9e-197 690.6 520 69.0
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.2e-196 690.3 586 63.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.5e-196 689.9 525 69.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.0e-196 689.5 434 79.3
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.6e-196 689.1 465 74.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.4e-196 688.7 529 71.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 9.8e-196 687.2 522 69.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.3e-195 686.8 462 75.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.9e-195 685.6 542 66.1
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.7e-195 685.3 525 69.3
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 8.3e-195 684.1 523 68.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.1e-194 683.7 531 68.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.4e-194 683.3 541 66.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 7.0e-194 681.0 534 67.8
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 7.0e-194 681.0 522 68.6
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.0e-193 677.9 518 70.5
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.3e-192 676.0 496 71.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.1e-190 669.5 525 67.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-189 666.4 537 66.5
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.5e-188 663.3 434 77.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 5.8e-188 661.4 522 67.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.2e-186 655.6 405 81.2
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-184 649.8 503 66.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.3e-183 644.4 411 77.9
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.2e-182 643.7 468 70.7
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.6e-182 643.3 527 65.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.0e-180 636.3 528 64.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.8e-179 632.1 536 62.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.9e-179 631.7 453 70.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.5e-177 625.5 519 64.5
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.3e-176 623.6 536 62.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.7e-176 623.2 464 69.4
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.6e-174 616.7 392 77.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.1e-174 616.3 528 63.4
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.4e-173 613.6 807 47.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 4.0e-173 612.1 523 62.3
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 6.9e-173 611.3 519 63.2
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.4e-172 608.6 536 61.6
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-171 607.1 524 61.6
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-171 607.1 524 61.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.7e-171 606.7 536 61.0
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.2e-171 606.3 519 62.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.9e-171 605.9 526 62.4
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 4.2e-170 602.1 524 61.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 4.2e-170 602.1 403 74.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 5.4e-170 601.7 550 60.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.0e-168 597.4 527 61.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-168 597.0 530 60.9
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 6.6e-168 594.7 458 65.7
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 6.6e-168 594.7 469 65.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 5.6e-167 591.7 392 75.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-166 590.5 540 59.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 9.0e-165 584.3 476 64.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.5e-164 583.6 456 65.1
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.6e-164 582.8 476 65.8
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.9e-162 576.6 591 56.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.4e-162 576.2 427 68.9
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.2e-161 573.9 643 52.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 4.5e-156 555.4 404 71.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.9e-155 552.0 494 61.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.6e-150 537.0 353 77.3
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.9e-147 526.2 535 57.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.9e-147 525.4 348 75.9
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.5e-146 521.9 555 55.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 6.7e-144 515.0 452 60.6
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.5e-140 502.3 451 58.8
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 6.9e-133 478.4 442 55.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.0e-131 472.2 540 51.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.7e-123 447.2 453 54.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.4e-120 437.6 468 50.9
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.6e-119 433.3 411 59.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-117 427.6 452 55.5
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 5.3e-109 399.1 506 47.4
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.9e-92 342.4 284 64.8
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.8e-89 333.6 446 42.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-86 324.7 215 74.9
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 3.7e-86 323.2 409 47.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.1e-85 321.6 439 43.1
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.4e-85 320.5 299 58.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 2.8e-81 307.0 380 48.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.8e-79 299.3 507 37.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.0e-64 250.0 231 63.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.4e-56 224.2 187 62.6
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 7.6e-55 219.2 159 69.2
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 4.3e-50 203.4 268 47.0
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.3e-48 196.4 205 54.6
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-46 191.4 264 45.1
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.4e-46 189.1 246 46.3
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.2e-44 185.3 448 34.8
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-39 168.7 168 56.0
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 2.2e-38 164.5 114 71.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.8e-38 163.7 170 55.9
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 9.3e-37 159.1 122 68.0
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-36 158.3 164 56.7
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-36 157.1 365 33.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-35 155.2 259 40.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.0e-35 154.1 242 43.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 4.3e-34 150.2 97 78.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.3e-33 148.7 164 51.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.8e-33 146.7 164 51.2
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 6.2e-33 146.4 235 43.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.5e-31 141.7 100 66.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.1e-29 132.9 105 63.8
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.9e-28 129.4 96 65.6
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.3e-27 128.6 112 59.8
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-27 128.6 81 80.2
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.0e-22 112.5 236 35.2
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 6.5e-22 109.8 129 49.6
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.5e-21 107.8 223 35.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 3.2e-21 107.5 223 35.4
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 5.7e-18 96.7 133 44.4
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.7e-17 94.0 126 45.2
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 3.7e-17 94.0 94 47.9
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.1e-16 90.5 63 69.8
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.3e-16 90.1 63 69.8
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.9e-16 89.7 84 57.1
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.8e-14 84.0 131 34.4
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.1e-11 73.6 115 43.5
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.4e-08 65.5 250 26.8
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 3.1e-08 64.3 38 76.3
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 3.1e-08 64.3 38 76.3
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 3.1e-08 64.3 38 76.3
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 3.1e-08 64.3 38 76.3
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 6.5e-06 56.6 43 67.4


User provided reference genes

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