Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 3.1e-106 388.7 223 100.0
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 2.0e-97 359.4 222 94.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 9.4e-95 350.5 222 91.4
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 2.7e-94 349.0 222 92.8
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.6e-94 348.6 222 91.0
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 4.0e-93 345.1 222 92.3
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 91.0
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 91.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 91.4
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.5e-92 343.2 222 90.5
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.5e-92 343.2 222 90.5
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.0e-92 342.8 222 90.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 2.0e-92 342.8 222 90.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.6e-92 342.4 222 90.5
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.3e-92 342.0 222 91.4
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 4.4e-92 341.7 223 88.8
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.4e-92 341.7 222 90.5
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 9.7e-92 340.5 224 88.8
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.3e-91 340.1 224 89.7
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.7e-91 339.7 222 89.6
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.7e-91 339.7 222 89.2
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.8e-91 339.0 222 91.0
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.3e-91 337.8 223 89.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.3e-91 337.8 223 89.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 8.2e-91 337.4 222 89.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 224 89.3
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.8e-90 336.3 223 89.2
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.8e-90 336.3 222 90.1
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.1e-90 335.5 222 88.7
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.1e-90 335.1 222 88.7
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 5.3e-90 334.7 222 90.1
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 7.0e-90 334.3 222 88.3
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 9.1e-90 334.0 222 87.8
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.6e-89 333.2 224 88.8
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-89 333.2 222 88.3
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.6e-89 333.2 222 89.6
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.0e-89 332.8 222 89.6
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 3.5e-89 332.0 235 86.0
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 4.5e-89 331.6 228 86.8
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 7.7e-89 330.9 225 86.7
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.0e-88 330.5 224 88.4
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 1.0e-88 330.5 222 86.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.0e-88 330.5 222 88.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.3e-88 330.1 222 87.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.3e-88 330.1 224 88.4
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.2e-88 329.3 222 86.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 2.2e-88 329.3 224 87.5
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.9e-88 328.9 226 85.8
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 3.8e-88 328.6 222 87.8
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 5.0e-88 328.2 221 87.8
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.0e-88 328.2 228 86.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.0e-88 328.2 228 86.8
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 8.5e-88 327.4 227 87.7
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.5e-88 327.4 224 87.5
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.1e-87 327.0 228 86.0
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.1e-87 327.0 229 85.6
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 229 85.6
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.5e-87 326.6 230 85.2
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.5e-87 326.6 231 85.7
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.5e-87 326.6 228 87.7
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 3.2e-87 325.5 228 87.3
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 5.5e-87 324.7 229 86.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 7.2e-87 324.3 231 86.1
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 7.2e-87 324.3 229 85.2
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 9.4e-87 323.9 226 85.8
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.2e-86 323.6 228 86.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.6e-86 323.2 221 86.9
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.1e-86 322.8 232 84.9
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.1e-86 322.8 229 86.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.7e-86 322.4 222 86.5
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 2.7e-86 322.4 228 86.4
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.7e-86 322.4 222 86.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 3.6e-86 322.0 222 85.1
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 3.6e-86 322.0 222 85.1
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 3.6e-86 322.0 222 86.9
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.6e-86 322.0 229 86.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 3.6e-86 322.0 229 86.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.6e-86 322.0 229 86.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 4.7e-86 321.6 224 86.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.7e-86 321.6 220 86.8
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.1e-86 321.2 224 86.2
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 6.1e-86 321.2 222 84.7
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 6.1e-86 321.2 222 84.7
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 6.1e-86 321.2 222 85.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.0e-86 320.9 222 85.1
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.0e-86 320.9 222 85.1
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.0e-85 320.5 228 85.5
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-85 320.1 222 84.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.4e-85 320.1 222 85.6
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.8e-85 319.7 224 86.2
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.0e-85 318.9 222 85.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.0e-85 318.9 222 85.1
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.0e-85 318.9 227 83.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 3.0e-85 318.9 226 85.8
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.0e-85 318.9 222 84.2
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.0e-85 318.9 222 84.2
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.0e-85 318.5 223 86.5
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.0e-85 318.5 223 86.5
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 4.0e-85 318.5 226 85.4
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 5.2e-85 318.2 228 84.2
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 5.2e-85 318.2 228 85.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 5.2e-85 318.2 228 84.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 222 85.1
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-84 317.0 222 84.2
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-84 317.0 222 84.2
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-84 317.0 222 84.2
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.5e-84 316.6 222 84.2
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.5e-84 316.6 222 84.2
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.5e-84 316.6 222 84.2
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-84 316.2 222 83.8
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.0e-84 316.2 222 83.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.6e-84 315.8 226 85.0
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 3.4e-84 315.5 223 83.9
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 3.7e-83 312.0 221 84.2
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.1e-82 310.5 268 73.5
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.4e-82 310.1 227 81.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.8e-82 309.7 209 85.6
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 3.1e-82 308.9 186 95.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 3.1e-82 308.9 186 95.7
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.1e-82 308.5 200 90.5
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.6e-81 306.6 214 86.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 4.5e-81 305.1 203 86.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.7e-80 303.1 198 88.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.8e-80 302.0 198 87.9
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.5e-79 300.1 225 81.3
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.2e-79 298.5 184 94.6
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 4.2e-79 298.5 223 82.1
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 7.2e-79 297.7 279 62.0
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.6e-78 295.4 186 92.5
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 8.8e-77 290.8 228 78.9
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.4e-74 283.5 223 79.8
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.8e-74 283.1 190 90.0
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.2e-73 280.4 168 97.0
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 4.5e-73 278.5 180 88.9
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 3.3e-71 272.3 187 86.1
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.0e-69 267.3 222 76.6
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 3.0e-69 265.8 221 72.9
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.2e-68 263.8 196 83.2
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.7e-68 261.5 164 92.7
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.3e-67 260.4 192 84.4
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 2.2e-67 259.6 169 89.9
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.6e-65 253.4 226 70.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.0e-64 249.2 219 65.8
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.6e-64 247.7 180 81.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.5e-63 246.1 148 98.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.0e-61 240.7 165 86.7
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.4e-61 240.4 148 93.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 9.2e-58 227.6 178 70.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.0e-56 224.2 137 97.8
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.3e-56 223.0 224 63.8
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 9.5e-55 217.6 196 68.4
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.1e-53 214.2 155 72.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.8e-53 213.4 119 85.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.1e-53 212.6 237 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.2e-51 206.5 195 71.3
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 4.1e-50 202.2 162 76.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.3e-48 196.4 136 72.8
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.3e-45 186.4 159 63.5
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.1e-34 151.0 118 69.5
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.7e-32 143.7 127 60.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.6e-28 129.8 92 72.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.4e-27 124.8 203 41.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.4e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.5e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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