Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.2e-97 359.0 185 100.0
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.2e-73 279.3 183 75.4
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.9e-73 278.1 185 74.6
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.9e-73 278.1 185 74.6
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.1e-72 276.9 183 74.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 1.1e-72 276.9 183 73.2
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 3.2e-72 275.4 183 74.3
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 3.2e-72 275.4 180 74.4
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 4.2e-72 275.0 182 71.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 7.1e-72 274.2 183 73.8
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 9.3e-72 273.9 183 73.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 2.1e-71 272.7 183 73.2
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.1e-71 272.7 176 73.3
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 2.7e-71 272.3 183 73.2
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 3.5e-71 271.9 184 73.9
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.5e-71 271.9 183 72.1
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 4.6e-71 271.6 182 70.9
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.6e-71 271.6 183 73.2
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 6.0e-71 271.2 184 70.7
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 7.9e-71 270.8 184 70.1
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.0e-70 270.4 182 70.9
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.3e-70 270.0 183 71.6
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.8e-70 269.6 184 73.4
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 2.3e-70 269.2 183 71.0
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 2.3e-70 269.2 183 73.2
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 3.0e-70 268.9 183 69.9
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 6.7e-70 267.7 183 70.5
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 6.7e-70 267.7 185 70.8
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 6.7e-70 267.7 184 70.1
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.1e-69 266.9 182 70.9
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.5e-69 266.5 185 70.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.5e-69 265.8 182 71.4
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.3e-69 265.4 183 69.4
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 4.3e-69 265.0 185 69.2
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.3e-68 263.5 182 69.8
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 1.3e-68 263.5 182 69.8
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.8e-68 262.3 183 69.4
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.8e-68 262.3 183 69.4
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 3.6e-68 261.9 181 70.7
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 3.6e-68 261.9 182 69.2
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 4.8e-68 261.5 181 69.6
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 6.2e-68 261.2 183 68.9
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.1e-67 260.4 180 70.6
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.4e-67 260.0 183 68.3
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 70.6
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 1.4e-67 260.0 184 69.6
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 178 69.1
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 1.4e-67 260.0 178 69.1
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.8e-67 259.6 183 69.4
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.8e-67 259.6 185 68.6
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 2.4e-67 259.2 179 69.3
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 67.9
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 4.0e-67 258.5 184 67.4
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 4.0e-67 258.5 183 67.8
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 4.0e-67 258.5 180 70.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.0e-67 258.5 179 69.3
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 5.3e-67 258.1 181 68.5
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 5.3e-67 258.1 185 67.0
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 6.9e-67 257.7 180 70.6
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 6.9e-67 257.7 184 69.0
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.2e-66 256.9 181 69.6
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.5e-66 256.5 181 68.0
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 3.4e-66 255.4 183 67.8
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 3.4e-66 255.4 183 67.8
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 3.4e-66 255.4 183 67.8
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 3.4e-66 255.4 181 67.4
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 7.6e-66 254.2 184 69.0
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 7.6e-66 254.2 180 68.9
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 7.6e-66 254.2 180 66.1
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 9.9e-66 253.8 181 68.5
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 9.9e-66 253.8 179 69.8
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 9.9e-66 253.8 180 66.7
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.7e-65 253.1 182 69.2
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.2e-65 252.7 181 66.3
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 2.9e-65 252.3 182 68.1
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 8.4e-65 250.8 182 66.5
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 8.4e-65 250.8 180 68.3
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 8.4e-65 250.8 182 67.0
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.1e-64 250.4 181 68.5
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 1.1e-64 250.4 179 68.7
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.4e-64 250.0 182 66.5
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 2.4e-64 249.2 182 65.9
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.4e-64 249.2 174 69.0
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 3.2e-64 248.8 180 67.8
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 4.2e-64 248.4 182 63.7
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 7.1e-64 247.7 182 64.3
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.9e-61 239.6 178 65.2
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 3.3e-61 238.8 168 69.6
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.3e-60 236.9 164 69.5
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 2.1e-60 236.1 178 64.0
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.8e-60 235.7 178 64.0
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 3.7e-60 235.3 178 65.2
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.4e-59 233.4 189 62.4
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 4.0e-59 231.9 177 65.0
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 6.9e-59 231.1 180 62.8
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 1.2e-58 230.3 180 61.7
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.5e-58 229.9 194 59.3
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-58 229.9 202 56.9
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.5e-58 228.4 171 64.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 7.6e-58 227.6 178 61.2
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.7e-57 226.5 201 56.2
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 8.4e-57 224.2 183 58.5
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 2.9e-49 199.1 158 65.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 5.0e-49 198.4 137 70.1
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 6.5e-49 198.0 158 64.6
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 1.1e-48 197.2 173 57.2
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.9e-46 188.7 141 66.0
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.3e-38 162.9 116 68.1
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 3.9e-38 162.2 106 70.8
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-37 160.2 192 43.2
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 5.7e-37 158.3 183 45.4
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 6.9e-35 151.4 178 45.5
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 3.4e-34 149.1 106 68.9
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 3.4e-34 149.1 171 45.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-32 143.3 188 43.1
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 4.2e-32 142.1 175 42.3
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 5.2e-30 135.2 181 41.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.7e-28 130.2 90 64.4
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.1e-27 125.9 179 40.2
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.1e-27 125.6 95 60.0
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 6.5e-25 118.2 170 36.5
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-21 107.1 93 53.8
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.7e-21 104.4 71 71.8
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 6.5e-09 65.1 162 28.4
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.5e-08 63.9 72 41.7
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 9.5e-08 61.2 182 26.9
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.2e-07 60.8 156 25.6
Atru.chr7.1340 Acer truncatum HOM05D003111 ORTHO05D003502 1.6e-07 60.5 163 24.5
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 3.6e-07 59.3 138 27.5
Nn8g39209 Nelumbo nucifera HOM05D003111 ORTHO05D003502 8.0e-07 58.2 148 27.7
Carub.0007s2934 Capsella rubella HOM05D003111 ORTHO05D003502 1.0e-06 57.8 156 26.9
TWI18G0418 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 1.0e-06 57.8 139 26.6
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 1.4e-06 57.4 164 30.5
TAR624G0200 Trochodendron aralioides HOM05D003111 ORTHO05D003502 1.8e-06 57.0 162 27.2
COL.COLO4_34909 Corchorus olitorius HOM05D003111 ORTHO05D003502 2.3e-06 56.6 128 29.7
Thecc.06G088700 Theobroma cacao HOM05D003111 ORTHO05D003502 3.0e-06 56.2 155 25.2
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 4.0e-06 55.8 150 27.3
CARHR042460 Cardamine hirsuta HOM05D003111 ORTHO05D003502 5.2e-06 55.5 146 23.3
Zm00001eb091070 Zea mays HOM05D006357 ORTHO05D007925 5.2e-06 55.5 39 66.7
BcaC08g43988 Brassica carinata HOM05D003111 ORTHO05D003502 6.8e-06 55.1 155 21.9
C06p13910 Brassica napus HOM05D003111 ORTHO05D003502 6.8e-06 55.1 155 21.9
BolC6t36571H Brassica oleracea HOM05D003111 ORTHO05D003502 6.8e-06 55.1 155 21.9
CSS0043759 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 6.8e-06 55.1 141 30.5
BraA05t20807Z Brassica rapa HOM05D003111 ORTHO05D003502 8.8e-06 54.7 150 21.3
Eucgr.F03017 Eucalyptus grandis HOM05D003111 ORTHO05D003502 8.8e-06 54.7 146 24.0
Manes.03G019600 Manihot esculenta HOM05D003111 ORTHO05D003502 8.8e-06 54.7 155 23.2


User provided reference genes

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