Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 5.2e-68 261.2 154 100.0
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 1.9e-17 93.2 93 78.5
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 4.2e-17 92.0 95 62.1
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 1.2e-16 90.5 94 55.3
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 1.6e-16 90.1 95 56.8
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.1e-16 89.7 95 58.9
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 6.0e-16 88.2 158 40.5
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 7.9e-16 87.8 94 55.3
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 1.0e-15 87.4 108 51.9
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 1.0e-15 87.4 97 53.6
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 1.0e-15 87.4 96 56.2
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 1.3e-15 87.0 98 54.1
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 1.3e-15 87.0 95 55.8
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 3.0e-15 85.9 86 59.3
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 3.9e-15 85.5 113 50.4
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 3.9e-15 85.5 95 53.7
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 5.1e-15 85.1 95 57.9
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 5.1e-15 85.1 95 57.9
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 8.7e-15 84.3 88 55.7
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 8.7e-15 84.3 95 52.6
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 8.7e-15 84.3 95 52.6
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 1.1e-14 84.0 95 71.6
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 1.1e-14 84.0 95 54.7
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 2.5e-14 82.8 57 71.9
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 3.3e-14 82.4 94 57.4
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 4.3e-14 82.0 96 70.8
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 4.3e-14 82.0 96 70.8
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 5.6e-14 81.6 94 53.2
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 5.6e-14 81.6 96 63.5
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 9.6e-14 80.9 96 64.6
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.3e-13 80.5 97 51.5
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.3e-13 80.5 93 50.5
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 1.6e-13 80.1 96 52.1
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 2.1e-13 79.7 96 55.2
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.8e-13 79.3 95 53.7
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.8e-13 79.3 93 50.5
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 2.8e-13 79.3 97 50.5
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 3.6e-13 79.0 92 51.1
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 4.8e-13 78.6 98 52.0
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 4.8e-13 78.6 58 70.7
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 6.2e-13 78.2 59 69.5
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 8.1e-13 77.8 163 38.7
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 8.1e-13 77.8 58 63.8
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 8.1e-13 77.8 93 75.3
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 8.1e-13 77.8 103 69.9
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.1e-12 77.4 95 49.5
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.1e-12 77.4 95 49.5
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 1.1e-12 77.4 59 71.2
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 1.8e-12 76.6 60 68.3
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 1.8e-12 76.6 86 53.5
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 2.4e-12 76.3 97 50.5
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.4e-12 76.3 59 67.8
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 6.9e-12 74.7 94 47.9
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 6.9e-12 74.7 58 67.2
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 6.9e-12 74.7 58 67.2
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 6.9e-12 74.7 58 67.2
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 6.9e-12 74.7 63 65.1
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 9.0e-12 74.3 63 65.1
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 1.5e-11 73.6 99 48.5
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 5.8e-11 71.6 62 61.3
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 5.8e-11 71.6 90 77.8
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 9.9e-11 70.9 100 64.0
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 9.9e-11 70.9 100 64.0
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 1.3e-10 70.5 59 62.7
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.7e-10 70.1 60 60.0
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.7e-10 70.1 60 60.0
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.2e-10 69.7 96 45.8
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.9e-10 69.3 100 63.0
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.9e-10 69.3 100 63.0
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 3.8e-10 68.9 62 59.7
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 4.9e-10 68.6 59 62.7
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 6.4e-10 68.2 116 38.8
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 6.4e-10 68.2 100 62.0
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 6.4e-10 68.2 59 59.3
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.1e-09 67.4 100 47.0
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 2.4e-09 66.2 103 40.8
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 2.4e-09 66.2 103 40.8
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 5.5e-09 65.1 120 36.7
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 5.5e-09 65.1 120 36.7
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 5.5e-09 65.1 59 62.7
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 7.1e-09 64.7 99 40.4
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 7.1e-09 64.7 103 39.8
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 7.1e-09 64.7 103 39.8
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 7.1e-09 64.7 106 39.6
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 9.3e-09 64.3 59 54.2
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 9.3e-09 64.3 59 54.2
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 1.2e-08 63.9 105 40.0
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 1.2e-08 63.9 95 42.1
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 1.2e-08 63.9 103 39.8
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 1.2e-08 63.9 61 57.4
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 1.2e-08 63.9 63 57.1
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 1.6e-08 63.5 89 43.8
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 2.1e-08 63.2 103 39.8
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 2.7e-08 62.8 104 38.5
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 3.5e-08 62.4 100 40.0
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 3.5e-08 62.4 60 58.3
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 3.5e-08 62.4 113 40.7
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 3.5e-08 62.4 62 58.1
GSVIVG01024785001 Vitis vinifera HOM05D005811 ORTHO05D007070 3.5e-08 62.4 93 67.7
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 6.0e-08 61.6 100 42.0
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 7.9e-08 61.2 104 37.5
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 7.9e-08 61.2 60 58.3
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 7.9e-08 61.2 99 62.6
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 7.9e-08 61.2 113 40.7
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 1.0e-07 60.8 104 38.5
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 1.0e-07 60.8 104 38.5
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 1.3e-07 60.5 89 42.7
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 1.8e-07 60.1 76 43.4
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 3.0e-07 59.3 111 41.4
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 3.9e-07 58.9 78 46.2
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 5.1e-07 58.5 80 45.0
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 6.7e-07 58.2 81 66.7
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 8.7e-07 57.8 77 51.9
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 1.1e-06 57.4 100 61.0
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 1.5e-06 57.0 62 51.6
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.5e-06 57.0 61 49.2
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 1.5e-06 57.0 80 70.0
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 2.5e-06 56.2 57 50.9
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 4.3e-06 55.5 42 66.7
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 5.6e-06 55.1 106 37.7
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 7.4e-06 54.7 101 36.6
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 7.4e-06 54.7 101 36.6
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 7.4e-06 54.7 104 37.5
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 7.4e-06 54.7 104 37.5
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 7.4e-06 54.7 104 37.5
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 7.4e-06 54.7 104 37.5
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 7.4e-06 54.7 66 42.4
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 9.6e-06 54.3 103 36.9


User provided reference genes

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