Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 5.5e-231 803.9 394 100.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.8e-150 535.8 382 69.9
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.2e-147 526.2 382 69.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.3e-146 520.8 381 67.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.1e-137 493.0 381 66.7
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 5.6e-135 485.0 379 66.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.3e-131 473.8 368 66.6
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.9e-131 472.6 368 66.8
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.9e-130 469.9 387 63.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.3e-128 463.8 372 64.2
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.5e-127 459.5 386 61.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.3e-126 457.2 386 61.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.2e-126 456.4 386 61.4
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.2e-124 450.7 384 62.8
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.9e-123 446.0 280 76.4
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-122 443.7 368 62.8
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.2e-122 441.4 372 59.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.1e-121 439.9 372 61.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.6e-121 438.7 368 61.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 7.9e-121 438.0 320 66.9
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 7.9e-121 438.0 379 62.0
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 7.9e-121 438.0 375 63.2
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 7.9e-121 438.0 372 61.0
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.3e-120 437.2 377 60.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.8e-120 436.8 377 61.0
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 5.1e-120 435.3 368 60.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 6.7e-120 434.9 360 61.7
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 6.7e-120 434.9 323 67.2
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.9e-119 433.3 373 59.0
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.5e-119 433.0 358 60.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.3e-119 432.2 443 54.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 5.7e-119 431.8 363 60.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 9.7e-119 431.0 369 60.4
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 9.7e-119 431.0 367 60.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.7e-118 429.1 370 59.2
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 8.2e-118 427.9 370 59.2
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.8e-117 426.8 372 57.8
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.4e-117 426.4 363 61.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.5e-116 423.7 316 64.2
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.5e-116 423.7 372 58.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.0e-116 423.3 363 59.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 4.5e-116 422.2 366 59.0
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 5.9e-116 421.8 381 60.4
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 5.9e-116 421.8 368 60.1
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.3e-115 420.6 372 57.5
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.7e-115 420.2 325 66.5
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.7e-115 420.2 369 58.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.7e-115 420.2 368 58.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.5e-115 418.3 372 57.3
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.1e-114 417.5 327 63.3
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.1e-114 417.5 329 64.4
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.9e-114 416.8 313 66.1
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.2e-114 416.0 338 62.4
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.6e-113 413.7 369 58.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.7e-113 412.9 385 56.9
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 6.1e-113 411.8 370 60.5
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 3.0e-112 409.5 347 61.7
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.1e-112 408.7 369 57.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 6.7e-112 408.3 335 61.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 3.3e-111 406.0 289 66.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.7e-111 405.2 318 64.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.3e-110 404.1 398 53.3
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 4.8e-110 402.1 290 66.9
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 4.8e-110 402.1 361 58.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.8e-110 402.1 318 62.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 3.1e-109 399.4 319 62.1
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.0e-108 396.7 289 66.1
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 2.0e-108 396.7 314 62.4
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 7.7e-108 394.8 348 59.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.3e-107 394.0 321 62.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.8e-107 392.5 385 55.3
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.4e-106 390.6 290 63.1
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.4e-106 390.6 359 57.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.4e-106 390.6 374 56.7
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.5e-106 389.8 385 55.3
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.2e-106 389.4 322 59.0
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.2e-106 389.4 320 61.9
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 9.4e-106 387.9 390 54.6
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.2e-105 387.5 373 53.6
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.1e-105 386.7 317 60.9
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.7e-105 386.3 317 59.0
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.7e-105 385.6 290 62.4
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.8e-104 383.6 270 68.1
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.3e-104 383.3 287 63.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 2.3e-104 383.3 375 54.4
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.2e-104 382.1 290 63.4
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 5.2e-104 382.1 290 63.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.7e-104 381.7 293 62.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.1e-103 380.9 314 59.6
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.0e-103 380.2 273 67.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 7.4e-103 378.3 378 53.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.3e-102 377.5 273 66.7
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.8e-102 376.3 375 54.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 8.2e-102 374.8 289 62.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 9.1e-101 371.3 289 62.3
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.2e-100 370.9 382 54.5
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.6e-100 370.5 377 52.8
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 2.6e-100 369.8 378 52.6
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 5.9e-100 368.6 275 65.1
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.9e-100 368.6 320 56.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 7.7e-100 368.2 345 55.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.2e-99 366.7 374 52.1
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.2e-99 366.7 365 53.2
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-99 366.7 318 59.7
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.2e-97 360.9 289 61.2
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 6.1e-97 358.6 314 57.6
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 8.0e-97 358.2 285 63.2
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 8.8e-96 354.8 273 66.3
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 2.4e-93 346.7 344 52.9
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.3e-91 340.9 340 53.2
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.2e-91 340.1 282 61.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.5e-87 327.4 306 55.6
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 4.4e-87 325.9 338 54.1
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 4.7e-81 305.8 263 62.4
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.0e-67 260.0 281 47.3
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.5e-66 257.7 280 47.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 5.6e-66 255.8 291 47.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.6e-65 253.1 191 62.8
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.1e-64 250.0 282 48.2
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 4.4e-63 246.1 270 47.0
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.4e-61 240.4 243 53.9
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.2e-60 238.0 295 44.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 7.3e-58 228.8 277 44.0
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.7e-52 210.3 164 63.4
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.9e-45 187.6 172 55.8
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 4.0e-32 143.3 140 52.9
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 3.8e-30 136.7 127 54.3
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.2e-29 133.3 86 72.1
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.9e-23 112.1 171 43.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.7e-22 111.3 102 55.9
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 4.6e-20 103.2 86 60.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.0e-19 102.1 118 49.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.0e-19 102.1 118 49.2
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.3e-17 95.1 77 64.9
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.8e-14 83.6 82 54.9
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.3e-11 75.1 71 54.9
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.0e-11 73.9 98 41.8
Pp3c21_3850 Physcomitrium patens HOM05D004293 ORTHO05D005044 1.3e-09 68.6 275 26.2
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 1.2e-07 62.0 48 60.4
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.4e-07 60.5 45 57.8
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 4.5e-07 60.1 48 58.3
ECA232G1213 Erigeron canadensis HOM05D000559 ORTHO05D000596 7.7e-07 59.3 244 25.4
FAN23G1598 Fragaria x ananassa HOM05D000559 ORTHO05D000596 1.0e-06 58.9 133 33.1
SMO307G0055 Selaginella moellendorffii HOM05D000559 ORTHO05D000596 1.3e-06 58.5 252 26.6
Ah.16g101230 Amaranthus hybridus HOM05D000559 ORTHO05D000596 2.2e-06 57.8 271 26.2
Manes.06G141400 Manihot esculenta HOM05D000559 ORTHO05D000596 8.5e-06 55.8 78 37.2


User provided reference genes

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