Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.0e-99 366.7 182 100.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.1e-27 125.9 196 38.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 4.4e-26 122.1 191 37.7
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 7.6e-26 121.3 187 39.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.7e-25 120.2 185 38.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.2e-25 119.8 182 37.9
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.2e-25 119.8 179 37.4
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.9e-25 119.4 187 38.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.8e-25 119.0 198 37.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 6.4e-25 118.2 183 39.9
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 8.4e-25 117.9 191 37.7
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 8.4e-25 117.9 177 36.7
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.1e-24 117.5 190 39.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.9e-24 116.7 186 36.0
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.9e-24 116.7 189 37.6
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.2e-24 115.9 179 38.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 5.4e-24 115.2 180 38.3
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-23 114.0 193 36.3
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.2e-23 114.0 180 40.0
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-23 114.0 181 37.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-23 113.6 193 35.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.6e-23 113.6 177 37.9
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.7e-23 112.8 193 36.3
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.0e-23 111.7 173 38.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.8e-23 111.3 185 37.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 7.8e-23 111.3 188 36.2
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.0e-22 110.9 180 40.0
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.7e-22 110.2 183 35.5
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.7e-22 110.2 171 39.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.3e-22 109.8 185 36.2
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.3e-22 109.8 189 36.0
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.9e-22 109.0 187 36.9
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.9e-22 109.0 169 36.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.6e-22 108.2 167 35.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 8.7e-22 107.8 172 36.6
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-21 107.5 178 36.0
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.5e-21 107.1 200 36.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-21 107.1 156 35.9
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.9e-21 106.7 172 35.5
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.9e-21 106.7 167 35.3
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.5e-21 106.3 155 36.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.3e-21 105.9 165 37.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.6e-21 105.1 162 38.3
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 5.6e-21 105.1 147 36.7
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.6e-21 105.1 186 36.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 7.3e-21 104.8 173 34.7
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 9.6e-21 104.4 170 35.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.6e-21 104.4 178 36.5
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.3e-20 104.0 167 34.1
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.3e-20 104.0 168 35.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.1e-20 103.2 166 35.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.1e-20 103.2 178 37.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.1e-20 103.2 157 39.5
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.8e-20 102.8 179 35.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.6e-20 102.4 183 32.8
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 3.6e-20 102.4 180 36.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.8e-20 102.1 167 34.7
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.2e-20 101.7 174 32.2
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.2e-20 101.7 147 37.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.2e-20 101.7 179 35.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.2e-20 101.7 168 35.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.2e-20 101.7 156 36.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 8.1e-20 101.3 147 36.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 8.1e-20 101.3 157 34.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.1e-19 100.9 160 35.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-19 100.9 147 36.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.4e-19 100.5 159 35.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.8e-19 100.1 181 36.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-19 100.1 181 36.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-19 100.1 181 36.5
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.8e-19 100.1 175 34.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.8e-19 100.1 168 34.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-19 99.8 157 35.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-19 99.8 174 31.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.1e-19 99.4 178 33.1
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.0e-19 99.0 164 36.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 5.3e-19 98.6 165 37.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 6.9e-19 98.2 176 34.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 6.9e-19 98.2 179 35.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 9.0e-19 97.8 157 35.0
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 9.0e-19 97.8 155 36.1
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.0e-19 97.8 178 36.0
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.2e-18 97.4 160 36.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.2e-18 97.4 173 35.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.5e-18 97.1 161 34.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-18 97.1 183 32.8
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.0e-18 96.7 175 34.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.6e-18 96.3 155 39.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-18 96.3 183 34.4
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.6e-18 96.3 159 33.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.4e-18 95.9 164 36.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.4e-18 95.9 150 35.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 5.8e-18 95.1 174 33.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.8e-18 95.1 158 35.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 5.8e-18 95.1 158 35.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 5.8e-18 95.1 173 32.9
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.8e-18 95.1 151 35.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 7.6e-18 94.7 158 35.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.6e-18 94.7 160 36.2
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 9.9e-18 94.4 175 33.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 9.9e-18 94.4 178 35.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.7e-17 93.6 177 33.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.2e-17 93.2 178 33.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-17 92.8 180 34.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-17 92.8 167 34.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.9e-17 92.8 144 34.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.8e-17 92.4 167 34.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.9e-17 92.0 181 33.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 4.9e-17 92.0 142 38.0
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 6.4e-17 91.7 172 33.1
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 6.4e-17 91.7 172 33.1
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 6.4e-17 91.7 167 34.1
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 8.4e-17 91.3 171 32.7
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.1e-16 90.9 187 32.6
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.4e-16 90.5 151 34.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-16 90.1 171 32.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.4e-16 89.7 169 33.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-16 89.7 169 33.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.4e-16 89.7 164 34.1
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.4e-16 89.7 177 32.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.2e-16 89.0 165 30.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.2e-16 89.0 164 34.1
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 9.3e-16 87.8 171 31.6
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 9.3e-16 87.8 171 31.6
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-15 87.0 175 32.6
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.6e-15 87.0 150 31.3
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.6e-15 85.5 147 35.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.9e-15 84.7 163 35.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 7.9e-15 84.7 158 35.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.3e-14 83.2 144 36.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.0e-14 82.8 162 35.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.9e-14 82.4 174 34.5
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.9e-13 80.1 138 36.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-13 80.1 121 36.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.3e-12 77.4 152 31.6
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.6e-12 75.9 144 34.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.6e-12 75.9 138 34.8
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.6e-12 75.9 149 30.9
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.8e-12 75.5 233 28.3
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.1e-12 74.7 141 34.8
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.8e-11 73.6 187 31.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.4e-11 73.2 128 33.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.1e-11 72.8 149 33.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 6.9e-11 71.6 115 39.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 9.0e-11 71.2 165 30.9
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-10 70.5 170 30.6
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.6e-10 68.2 123 37.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.6e-10 68.2 67 50.7
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.9e-10 67.8 122 35.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-07 60.8 73 42.5


User provided reference genes

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