Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00810 Aquilegia oxysepala HOM05D007653 ORTHO05D009670 3.7e-151 538.1 262 100.0
TAR369G0435 Trochodendron aralioides HOM05D007653 ORTHO05D009670 7.3e-38 161.8 267 41.6
QL07p034260 Quercus lobata HOM05D007653 ORTHO05D009670 4.6e-32 142.5 266 36.5
TWI74G0740 Tripterygium wilfordii HOM05D007653 ORTHO05D009670 4.3e-30 136.0 248 34.7
DCAR_028874 Daucus carota HOM05D007653 ORTHO05D009670 9.5e-30 134.8 220 39.5
Cfa017149 Carpinus fangiana HOM05D007653 ORTHO05D009670 2.1e-29 133.7 269 34.2
Nn2g10953 Nelumbo nucifera HOM05D007653 ORTHO05D009670 3.6e-29 132.9 287 36.9
Glyma.03G051200 Glycine max HOM05D007653 ORTHO05D009670 1.1e-28 131.3 260 36.2
CiPaw.10G159500 Carya illinoinensis HOM05D007653 ORTHO05D009670 2.3e-28 130.2 257 34.6
Lj3g0004323 Lotus japonicus HOM05D007653 ORTHO05D009670 6.8e-28 128.6 268 34.7
Manes.09G109500 Manihot esculenta HOM05D007653 ORTHO05D009670 6.8e-28 128.6 270 32.6
Phvul.010G060900 Phaseolus vulgaris HOM05D007653 ORTHO05D009670 6.8e-28 128.6 270 36.3
Potri.016G123700 Populus trichocarpa HOM05D007653 ORTHO05D009670 1.2e-27 127.9 243 35.4
Actinidia20753 Actinidia chinensis HOM05D007653 ORTHO05D009670 2.6e-27 126.7 243 39.5
Ca_07676_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 3.4e-27 126.3 262 35.9
Thecc.05G009700 Theobroma cacao HOM05D007653 ORTHO05D009670 3.4e-27 126.3 272 33.5
Lalb_Chr12g0207101 Lupinus albus HOM05D007653 ORTHO05D009670 5.8e-27 125.6 233 37.8
PSO339G6297 Papaver somniferum HOM05D007653 ORTHO05D009670 9.9e-27 124.8 268 40.3
Glyma.01G124000 Glycine max HOM05D007653 ORTHO05D009670 1.7e-26 124.0 268 34.0
Medtr7g069710 Medicago truncatula HOM05D007653 ORTHO05D009670 2.2e-26 123.6 258 34.9
Prupe.6G282500 Prunus persica HOM05D007653 ORTHO05D009670 2.9e-26 123.2 236 36.4
MD04G1163000 Malus domestica HOM05D007653 ORTHO05D009670 3.7e-26 122.9 247 34.4
TPR.G21326 Trifolium pratense HOM05D007653 ORTHO05D009670 6.4e-26 122.1 262 34.7
Medtr4g014670 Medicago truncatula HOM05D007653 ORTHO05D009670 8.3e-26 121.7 272 35.3
VMungo0331G0216 Vigna mungo HOM05D007653 ORTHO05D009670 3.2e-25 119.8 273 34.1
TPR.G5265 Trifolium pratense HOM05D007653 ORTHO05D009670 9.2e-25 118.2 268 35.1
Duzib093G1250 Durio zibethinus HOM05D007653 ORTHO05D009670 1.2e-24 117.9 258 34.5
arahy.Tifrunner.gnm1.ann1.4LI2NJ Arachis hypogaea HOM05D007653 ORTHO05D009670 2.1e-24 117.1 249 34.9
Gorai.002G265600 Gossypium raimondii HOM05D007653 ORTHO05D009670 2.1e-24 117.1 262 32.8
Psat7g247360 Pisum sativum HOM05D007653 ORTHO05D009670 2.1e-24 117.1 262 34.0
Gohir.D01G218900 Gossypium hirsutum HOM05D007653 ORTHO05D009670 3.5e-24 116.3 262 32.8
COL.COLO4_14486 Corchorus olitorius HOM05D007653 ORTHO05D009670 4.6e-24 115.9 280 33.2
RcHm_v2.0_Chr3g0462281 Rosa chinensis HOM05D007653 ORTHO05D009670 6.0e-24 115.5 249 35.3
Glyma.07G154000 Glycine max HOM05D007653 ORTHO05D009670 2.3e-23 113.6 250 34.4
Gohir.A01G229000 Gossypium hirsutum HOM05D007653 ORTHO05D009670 5.1e-23 112.5 262 32.4
Cpa.g.sc120.35 Carica papaya HOM05D007653 ORTHO05D009670 1.5e-22 110.9 251 33.9
FAN05G3332 Fragaria x ananassa HOM05D007653 ORTHO05D009670 5.6e-22 109.0 259 34.7
Dinv08443 Davidia involucrata HOM05D007653 ORTHO05D009670 7.3e-22 108.6 267 33.3
Sabra16G0118500 Salix brachista HOM05D007653 ORTHO05D009670 7.3e-22 108.6 255 32.5
ECA247G1536 Erigeron canadensis HOM05D007653 ORTHO05D009670 9.6e-22 108.2 219 37.9
VMungo1383G1231 Vigna mungo HOM05D007653 ORTHO05D009670 9.6e-22 108.2 270 34.1
Sc07g0006490 Simmondsia chinensis HOM05D007653 ORTHO05D009670 1.6e-21 107.5 278 34.2
Atru.chr8.2298 Acer truncatum HOM05D007653 ORTHO05D009670 6.2e-21 105.5 289 31.5
Oeu057628.1 Olea europaea HOM05D007653 ORTHO05D009670 6.2e-21 105.5 225 36.0
FAN14G3858 Fragaria x ananassa HOM05D001497 ORTHO05D001619 1.4e-20 104.4 259 34.7
EL10Ac5g12516 Beta vulgaris HOM05D007653 ORTHO05D009670 1.8e-20 104.0 237 33.3
Rhsim04G0175600 Rhododendron simsii HOM05D007653 ORTHO05D009670 3.1e-20 103.2 237 35.0
Ca_20332_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 6.8e-20 102.1 217 36.9
MELO3C026011.2 Cucumis melo HOM05D007653 ORTHO05D009670 6.8e-20 102.1 277 31.4
Ciclev10012426m.g Citrus clementina HOM05D007653 ORTHO05D009670 8.9e-20 101.7 270 31.1
Lalb_Chr01g0023261 Lupinus albus HOM05D007653 ORTHO05D009670 4.4e-19 99.4 294 29.6
CsaV3_4G026460 Cucumis sativus L. HOM05D007653 ORTHO05D009670 1.3e-18 97.8 287 31.4
Actinidia32531 Actinidia chinensis HOM05D007653 ORTHO05D009670 3.8e-18 96.3 238 35.3
ClCG04G006820 Citrullus lanatus HOM05D007653 ORTHO05D009670 4.9e-18 95.9 272 30.9
Sed0001003 Sechium edule HOM05D007653 ORTHO05D009670 8.4e-18 95.1 272 32.0
PGSC0003DMG400026639 Solanum tuberosum HOM05D007653 ORTHO05D009670 8.4e-18 95.1 250 32.8
Migut.L02038 Erythranthe guttata HOM05D007653 ORTHO05D009670 4.2e-17 92.8 225 33.3
Eucgr.K00125 Eucalyptus grandis HOM05D007653 ORTHO05D009670 4.2e-17 92.8 170 40.0
CAN.G588.49 Capsicum annuum HOM05D007653 ORTHO05D009670 3.5e-16 89.7 185 37.8
Haze_21051 Corylus avellana HOM05D007653 ORTHO05D009670 7.8e-16 88.6 245 29.4
Lsat_1_v5_gn_9_37441 Lactuca sativa HOM05D007653 ORTHO05D009670 1.3e-15 87.8 230 35.7
Nn7g37369 Nelumbo nucifera HOM05D007653 ORTHO05D009670 1.3e-15 87.8 265 30.9
Phvul.008G094700 Phaseolus vulgaris HOM05D001497 ORTHO05D001707 1.3e-15 87.8 223 31.8
AUR62030507 Chenopodium quinoa HOM05D007653 ORTHO05D009670 1.1e-14 84.7 255 31.8
Cc06_g00970 Coffea canephora HOM05D001108 ORTHO05D001619 1.1e-14 84.7 191 35.6
AL5G32220 Arabidopsis lyrata HOM05D007653 ORTHO05D009670 2.5e-14 83.6 241 33.6
Cc06_g00860 Coffea canephora HOM05D007653 ORTHO05D009670 2.5e-14 83.6 191 35.6
Peaxi162Scf01132g00319 Petunia axillaris HOM05D007653 ORTHO05D009670 7.3e-14 82.0 183 33.9
Solyc09g005020.1 Solanum lycopersicum HOM05D007653 ORTHO05D009670 1.6e-13 80.9 248 31.0
CARHR161390 Cardamine hirsuta HOM05D007653 ORTHO05D009670 2.8e-13 80.1 241 30.3
AT3G51760 Arabidopsis thaliana HOM05D007653 ORTHO05D009670 3.6e-13 79.7 243 32.9
Thhalv10010652m.g Eutrema salsugineum HOM05D007653 ORTHO05D009670 4.8e-13 79.3 240 29.6
A09p44930 Brassica napus HOM05D007653 ORTHO05D009670 1.8e-12 77.4 240 29.2
BraA09t39952Z Brassica rapa HOM05D007653 ORTHO05D009670 1.8e-12 77.4 240 29.2
BcaB01g00481 Brassica carinata HOM05D007653 ORTHO05D009670 2.4e-12 77.0 240 29.2
C08p26990 Brassica napus HOM05D007653 ORTHO05D009670 2.4e-12 77.0 240 29.2
BolC8t50316H Brassica oleracea HOM05D007653 ORTHO05D009670 2.4e-12 77.0 240 29.2
Sp5g10510 Schrenkiella parvula HOM05D007653 ORTHO05D009670 2.4e-12 77.0 242 30.6
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 5.3e-12 75.9 204 35.3
BraA08t34475Z Brassica rapa HOM05D002063 ORTHO05D002075 5.3e-12 75.9 199 34.7
Nn6g33585 Nelumbo nucifera HOM05D007653 ORTHO05D009670 5.3e-12 75.9 245 29.0
BcaB01g00421 Brassica carinata HOM05D007653 ORTHO05D009670 6.9e-12 75.5 241 29.0
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 9.0e-12 75.1 204 34.8
A08p25230 Brassica napus HOM05D002063 ORTHO05D002075 9.0e-12 75.1 199 34.7
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 9.0e-12 75.1 204 34.8
Carub.0005s1811 Capsella rubella HOM05D007653 ORTHO05D009670 7.6e-11 72.0 240 29.2
AUR62030786 Chenopodium quinoa HOM05D007653 ORTHO05D009670 9.9e-11 71.6 215 31.6
THA.LOC104806615 Tarenaya hassleriana HOM05D007653 ORTHO05D009670 9.9e-11 71.6 252 27.0
BcaB03g12147 Brassica carinata HOM05D002063 ORTHO05D002075 2.2e-10 70.5 201 33.8
FAN09G3847 Fragaria x ananassa HOM05D007653 ORTHO05D009670 2.9e-10 70.1 218 29.4
Nitab4.5_0009553g0030 Nicotiana tabacum HOM05D007653 ORTHO05D009670 4.9e-10 69.3 173 32.9
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 4.9e-10 69.3 181 34.8
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 1.1e-09 68.2 213 31.0
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 1.4e-09 67.8 212 29.7
C07p16460 Brassica napus HOM05D002063 ORTHO05D002075 2.4e-09 67.0 168 33.3
BcaC06g35413 Brassica carinata HOM05D002063 ORTHO05D002075 3.2e-09 66.6 168 33.3
BolC7t42142H Brassica oleracea HOM05D002063 ORTHO05D002075 3.2e-09 66.6 168 33.3
GSVIVG01020715001 Vitis vinifera HOM05D002063 ORTHO05D002075 3.2e-09 66.6 183 31.7
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 4.2e-09 66.2 176 32.4
SGA_v2.0_scaffold110G31197 Striga asiatica HOM05D007653 ORTHO05D009670 5.4e-09 65.9 216 29.6
ATR0602G233 Amborella trichopoda HOM05D002063 ORTHO05D002075 7.1e-09 65.5 356 24.4
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 9.3e-09 65.1 212 29.2
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 1.2e-08 64.7 209 31.1
Aa31sc892G20 Aethionema arabicum HOM05D007653 ORTHO05D009670 1.2e-08 64.7 238 28.6
TAR624G0717 Trochodendron aralioides HOM05D002063 ORTHO05D002075 1.6e-08 64.3 292 27.4
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 2.1e-08 63.9 205 30.2
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 4.6e-08 62.8 208 31.2
HPP92_021765 Vanilla planifolia HOM05D002063 ORTHO05D002075 1.3e-07 61.2 203 28.6
Nn4g22427 Nelumbo nucifera HOM05D007653 ORTHO05D009670 1.7e-07 60.8 99 40.4
VMungo0251G3479 Vigna mungo HOM05D002063 ORTHO05D002075 1.7e-07 60.8 209 28.2
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 3.0e-07 60.1 211 28.9
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 3.9e-07 59.7 215 28.4
Ca_13072_v3 Cicer arietinum L. HOM05D000037 ORTHO05D002075 5.1e-07 59.3 217 26.7
Nn1g06127 Nelumbo nucifera HOM05D007653 ORTHO05D009670 5.1e-07 59.3 203 31.0
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 5.1e-07 59.3 215 28.4
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 5.1e-07 59.3 227 28.6
AT1G29240 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 6.6e-07 58.9 193 31.6
MELO3C018721.2 Cucumis melo HOM05D002063 ORTHO05D002075 6.6e-07 58.9 145 33.8
Nn2g12482 Nelumbo nucifera HOM05D007653 ORTHO05D009670 6.6e-07 58.9 75 44.0
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 8.7e-07 58.5 216 29.2
Hma1.2p1_0333F.1_g128110 Hydrangea macrophylla HOM05D002063 ORTHO05D002075 1.1e-06 58.2 195 28.7
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 1.5e-06 57.8 213 27.2
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 1.5e-06 57.8 238 27.3
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 1.9e-06 57.4 313 26.5
CAN.G1716.2 Capsicum annuum HOM05D002063 ORTHO05D002075 2.5e-06 57.0 214 27.1
Atru.chr6.2783 Acer truncatum HOM05D002063 ORTHO05D002075 3.3e-06 56.6 165 32.7
Rhsim06G0130600 Rhododendron simsii HOM05D002063 ORTHO05D002075 3.3e-06 56.6 202 29.7
SEGI_16088 Sequoiadendron giganteum HOM05D002063 ORTHO05D002075 3.3e-06 56.6 249 25.7
Oeu053234.3 Olea europaea HOM05D002063 ORTHO05D002075 4.3e-06 56.2 190 30.0
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 5.6e-06 55.8 220 29.1
Manes.17G056500 Manihot esculenta HOM05D002063 ORTHO05D002075 5.6e-06 55.8 222 28.8
CAN.G370.91 Capsicum annuum HOM05D002063 ORTHO05D002075 7.3e-06 55.5 205 26.3
vmacro12381 Vaccinium macrocarpon HOM05D002063 ORTHO05D002075 7.3e-06 55.5 228 30.3
Atru.chr6.2786 Acer truncatum HOM05D002063 ORTHO05D002075 9.6e-06 55.1 165 32.1
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 9.6e-06 55.1 213 26.8
CARHR124530 Cardamine hirsuta HOM05D002063 ORTHO05D002075 9.6e-06 55.1 184 31.5
CsaV3_7G005700 Cucumis sativus L. HOM05D002063 ORTHO05D002075 9.6e-06 55.1 145 33.8
Lju1655A0T37 Lonicera japonica HOM05D002063 ORTHO05D002075 9.6e-06 55.1 203 27.6
Os05g0470900 Oryza sativa ssp. japonica HOM05D026184 ORTHO05D030354 9.6e-06 55.1 146 35.6


User provided reference genes

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