Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.3e-185 652.9 329 100.0
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.7e-148 528.5 323 78.3
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.3e-142 509.2 323 75.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 9.8e-141 503.8 323 73.7
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.7e-140 501.9 324 75.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.2e-139 498.8 322 74.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 5.4e-139 498.0 321 74.5
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.6e-138 496.5 325 73.2
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.6e-138 495.0 327 74.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.6e-138 495.0 321 72.6
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.0e-137 492.3 323 72.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-136 490.3 321 72.0
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-136 490.3 321 71.7
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.9e-136 489.6 324 72.8
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 4.3e-136 488.4 325 72.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.3e-136 487.6 332 71.7
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.1e-135 486.1 325 72.0
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.6e-135 485.3 316 74.7
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 8.0e-135 484.2 322 73.0
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.4e-134 483.4 322 73.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.8e-134 483.0 325 72.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.1e-134 482.3 321 72.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.0e-133 479.6 323 70.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.8e-133 478.0 322 71.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 9.8e-133 477.2 321 69.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.2e-132 476.1 322 70.8
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.9e-132 475.7 325 70.5
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 8.3e-132 474.2 325 68.6
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.9e-131 473.0 322 71.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 5.4e-131 471.5 326 69.3
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.4e-131 471.5 326 69.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.0e-131 471.1 324 69.4
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.2e-131 470.7 325 70.8
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.2e-130 470.3 326 69.9
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-130 469.9 326 69.0
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.6e-130 469.9 325 68.9
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 6.0e-130 468.0 325 70.2
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.8e-130 467.6 318 69.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 7.8e-130 467.6 322 68.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 7.8e-130 467.6 322 68.6
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.8e-130 467.6 327 69.1
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.3e-129 466.1 325 68.9
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 3.9e-129 465.3 318 69.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.0e-129 464.9 325 68.3
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.0e-129 464.9 320 70.9
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.6e-129 464.5 327 67.9
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 6.6e-129 464.5 327 68.2
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 8.6e-129 464.2 322 70.8
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.1e-128 463.8 322 68.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.5e-128 463.4 318 70.4
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.9e-128 463.0 322 68.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 4.3e-128 461.8 325 68.0
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 5.6e-128 461.5 325 67.7
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 5.6e-128 461.5 324 68.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 7.3e-128 461.1 322 68.6
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.6e-127 459.9 325 70.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-127 459.5 321 68.5
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.8e-127 459.1 322 68.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 2.8e-127 459.1 322 68.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.6e-127 458.8 321 68.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.6e-127 458.8 327 67.9
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.7e-127 458.4 325 68.6
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 6.2e-127 458.0 325 68.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.4e-126 456.8 328 67.7
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.1e-126 455.7 325 69.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.0e-126 455.3 322 68.6
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.9e-126 454.1 321 67.6
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.2e-125 453.8 322 67.1
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.4e-125 452.2 326 67.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.4e-125 452.2 326 67.5
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.5e-125 451.1 320 68.8
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 9.9e-125 450.7 320 68.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.3e-124 450.3 318 67.0
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.4e-123 444.9 323 67.2
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 5.4e-123 444.9 325 68.3
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.2e-122 443.7 329 66.6
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.2e-122 443.7 325 65.8
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.2e-122 443.7 277 77.6
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.1e-122 443.0 322 65.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.7e-122 442.6 306 69.3
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 4.6e-122 441.8 325 64.3
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.0e-121 440.7 325 64.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.0e-121 440.7 369 61.2
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 2.3e-121 439.5 325 64.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.9e-121 438.7 325 64.0
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.9e-121 438.7 325 63.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.6e-121 437.6 310 66.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.6e-119 433.3 325 63.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.1e-119 433.0 325 62.5
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.6e-119 432.2 310 66.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.1e-118 430.6 321 64.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.0e-118 428.7 324 63.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 5.2e-118 428.3 324 63.6
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 5.2e-118 428.3 322 63.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.2e-117 427.2 323 61.9
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-117 427.2 324 62.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 5.8e-117 424.9 325 62.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 9.9e-117 424.1 323 61.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 4.9e-116 421.8 325 62.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 9.2e-115 417.5 323 61.9
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 9.2e-115 417.5 323 63.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.6e-114 416.8 320 65.3
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.9e-112 409.8 318 62.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.6e-112 408.3 287 69.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 5.6e-112 408.3 328 61.9
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.6e-111 406.8 264 74.2
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.1e-111 406.4 416 55.8
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.1e-110 402.5 376 55.9
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.9e-108 396.0 253 74.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.6e-106 390.2 323 57.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.0e-105 387.5 304 62.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.9e-104 383.3 322 59.3
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.8e-103 379.4 322 59.6
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.2e-103 378.3 324 56.8
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.1e-103 377.9 321 59.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-98 364.0 324 59.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.3e-97 360.5 543 40.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 3.3e-96 355.9 290 60.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 4.8e-95 352.1 683 34.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.2e-93 347.4 269 64.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.2e-90 337.4 310 52.9
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.4e-88 328.2 280 57.5
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.0e-85 320.1 256 61.7
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.8e-84 315.8 235 64.3
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.5e-84 315.1 202 74.8
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.1e-83 314.3 312 48.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.3e-83 311.2 312 47.8
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.1e-82 310.1 220 65.9
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 6.0e-82 308.5 306 51.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.2e-69 267.7 221 58.8
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.4e-67 260.8 176 72.7
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 4.8e-55 219.2 304 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.5e-48 197.6 196 48.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.3e-36 157.1 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 7.5e-32 142.1 99 66.7
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.6e-29 134.4 327 28.4
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.9e-29 132.5 86 74.4
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-28 130.6 93 63.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.8e-28 129.8 75 74.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.0e-28 129.4 93 63.4
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 8.6e-28 128.6 99 62.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.6e-26 123.2 118 54.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 4.9e-23 112.8 81 64.2
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.6e-18 97.8 71 64.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.6e-16 90.5 63 68.3
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.3e-12 77.4 56 62.5
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.8e-10 70.5 101 44.6
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.1e-09 67.0 54 59.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.1e-09 67.0 54 59.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 4.0e-09 66.6 54 59.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.6e-08 63.9 43 62.8
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 2.4e-06 57.4 62 48.4


User provided reference genes

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