Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 6.5e-249 863.6 437 100.0
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 4.4e-197 691.4 434 79.5
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.6e-189 665.6 432 75.7
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.4e-187 659.1 434 73.7
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.4e-187 657.9 433 74.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.5e-186 655.2 430 74.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.7e-185 652.9 433 73.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 9.5e-184 647.1 433 73.0
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 8.9e-182 640.6 434 72.6
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.2e-181 640.2 433 71.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 3.4e-181 638.6 436 70.9
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.4e-181 638.3 432 72.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.3e-180 636.7 432 72.7
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.7e-180 636.3 433 70.9
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.2e-180 636.0 430 72.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.7e-180 635.2 434 71.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.9e-180 634.8 435 72.2
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 8.3e-180 634.0 432 72.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.1e-179 633.6 434 70.7
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.1e-179 633.6 435 72.0
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.9e-179 632.9 433 72.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.1e-179 631.7 434 71.0
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 5.4e-179 631.3 433 70.7
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 2.7e-178 629.0 433 70.9
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.7e-178 629.0 433 71.4
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.3e-177 626.7 431 70.8
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.7e-177 626.3 433 70.4
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 3.9e-177 625.2 433 71.4
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 6.6e-177 624.4 459 69.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 5.6e-176 621.3 430 70.9
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 9.5e-176 620.5 433 71.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.6e-175 619.8 430 70.9
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.6e-175 619.8 436 69.7
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.6e-175 619.8 435 69.7
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 3.6e-175 618.6 435 70.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 4.7e-175 618.2 430 70.2
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.7e-175 618.2 428 71.0
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 4.7e-175 618.2 430 69.8
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.1e-175 617.5 435 68.5
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.1e-174 617.1 471 65.0
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.4e-174 615.9 433 69.3
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.4e-174 615.9 437 69.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 2.4e-174 615.9 432 69.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 8.9e-174 614.0 430 69.3
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 7.6e-173 610.9 434 70.0
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 2.2e-172 609.4 430 70.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 4.9e-172 608.2 430 69.3
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 6.4e-172 607.8 436 68.6
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 4.2e-171 605.1 433 68.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 9.2e-171 604.0 433 68.6
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.6e-170 603.2 429 68.8
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.0e-170 601.3 439 67.7
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 5.1e-169 598.2 430 68.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 5.1e-169 598.2 430 68.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 8.7e-169 597.4 431 69.1
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.1e-168 597.0 432 68.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.9e-168 596.3 430 68.8
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.5e-168 595.9 426 68.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.3e-168 595.5 430 68.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.3e-168 595.1 430 68.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.6e-168 594.7 434 67.7
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.6e-168 594.7 428 68.0
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.6e-168 594.0 432 68.3
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.6e-168 594.0 430 68.1
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.6e-167 593.2 432 68.8
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.6e-167 593.2 430 68.1
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.6e-167 593.2 432 68.8
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 5.3e-166 588.2 434 68.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 6.9e-166 587.8 433 67.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.9e-166 587.8 446 66.6
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.4e-165 585.5 415 70.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.9e-164 582.4 431 68.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 8.4e-164 580.9 429 67.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.1e-163 580.5 434 65.9
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.3e-161 573.5 443 65.9
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-160 570.5 434 67.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.5e-160 570.1 514 58.8
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.3e-160 568.9 474 61.8
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 3.6e-159 565.5 415 67.5
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 3.6e-159 565.5 435 65.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.2e-159 564.7 474 61.2
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 2.0e-157 559.7 473 61.3
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 5.8e-157 558.1 527 56.4
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.7e-156 556.6 375 73.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.4e-155 552.7 431 64.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.3e-155 550.8 431 64.7
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.7e-153 544.3 382 72.5
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.1e-150 535.8 421 64.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.0e-148 530.8 430 63.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.4e-147 526.9 375 69.6
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.0e-146 521.5 432 62.5
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.3e-144 515.8 376 67.3
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 2.8e-143 512.7 377 67.4
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-142 510.8 377 67.1
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 5.5e-139 498.4 727 42.1
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 6.1e-138 495.0 420 61.0
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 8.7e-137 491.1 452 58.2
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.6e-135 486.9 362 68.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.4e-134 483.8 435 57.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 7.2e-131 471.5 695 41.9
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 9.4e-131 471.1 442 55.2
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 2.8e-127 459.5 431 52.9
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 9.1e-126 454.5 300 74.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.9e-117 425.2 320 67.2
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 6.5e-116 421.8 431 50.6
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.5e-115 419.9 339 64.6
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 9.7e-112 407.9 341 61.9
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.3e-111 407.5 295 69.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.5e-107 393.3 435 49.2
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 8.5e-100 368.2 352 52.8
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 9.5e-91 338.2 246 71.1
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.9e-87 325.9 219 73.1
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 9.2e-86 321.6 222 75.7
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-70 271.6 237 62.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 8.9e-65 251.9 430 36.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.7e-63 247.7 161 78.3
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-61 241.5 284 50.0
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.3e-60 237.3 215 59.5
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.4e-54 217.2 434 35.7
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.2e-54 216.9 135 79.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 9.3e-54 215.3 159 67.9
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.0e-52 210.3 142 70.4
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.8e-50 203.8 134 69.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.8e-47 193.4 140 65.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.7e-45 187.2 149 57.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 6.2e-42 176.0 321 35.2
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 6.0e-37 159.5 200 48.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 1.8e-36 157.9 193 48.7
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.0e-28 130.6 126 56.3
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.6e-21 106.7 95 50.5
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 6.1e-21 106.3 146 44.5
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 3.3e-19 100.5 87 54.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 5.3e-17 93.2 55 72.7
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.3e-15 88.6 85 45.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 5.0e-15 86.7 73 53.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 3.2e-14 84.0 74 52.7
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.1e-13 81.3 74 51.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 3.7e-10 70.5 53 64.2
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 6.9e-09 66.2 40 70.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.6e-08 64.3 47 61.7
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.7e-07 61.6 41 61.0
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.2e-06 57.4 42 57.1


User provided reference genes

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