Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 4.7e-233 810.8 408 100.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.2e-180 636.7 409 76.5
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.5e-175 619.8 408 74.0
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.5e-175 619.8 408 74.8
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.7e-174 616.3 408 74.0
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.7e-174 615.1 408 73.8
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 74.3
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 6.4e-174 614.4 408 73.8
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.4e-173 613.2 408 74.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 7.1e-173 610.9 408 74.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.6e-172 609.8 408 73.5
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.6e-172 609.8 408 74.8
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 2.1e-172 609.4 410 72.7
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.1e-172 609.4 408 73.5
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.5e-172 608.6 408 73.3
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.0e-172 607.8 408 75.2
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.8e-172 607.4 408 73.3
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.8e-172 607.4 408 73.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.7e-171 606.3 408 73.8
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 5.1e-171 604.7 409 72.9
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.6e-171 604.4 408 72.5
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 8.6e-171 604.0 407 73.7
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 8.6e-171 604.0 407 73.7
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.5e-170 602.4 408 71.8
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 72.3
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 72.3
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 73.3
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.6e-169 599.7 407 73.0
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.2e-169 597.8 408 73.0
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 70.8
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.1e-168 595.5 411 70.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.1e-168 595.5 408 71.6
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 72.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.5e-167 593.2 410 70.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.5e-167 593.2 409 71.4
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 3.4e-167 592.0 408 70.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.4e-167 592.0 408 71.1
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.3e-166 590.1 408 71.1
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.3e-166 590.1 408 71.1
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.3e-166 590.1 408 71.1
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.2e-166 589.3 408 71.6
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 2.2e-166 589.3 408 72.1
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.9e-166 589.0 408 70.8
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.8e-166 588.6 409 71.1
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 4.9e-166 588.2 408 69.6
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 8.4e-166 587.4 408 69.6
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.4e-165 586.6 408 69.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.4e-165 586.6 408 69.9
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-165 586.3 398 71.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 5.4e-165 584.7 408 70.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.2e-164 583.6 408 72.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-164 583.2 398 71.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.7e-164 582.4 408 70.3
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.0e-163 580.5 404 70.5
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.0e-163 580.5 408 69.1
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.3e-163 580.1 408 69.1
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.3e-163 579.3 407 71.0
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.0e-163 578.9 408 69.4
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 5.1e-163 578.2 408 68.9
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.5e-162 576.6 412 71.1
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.5e-162 576.6 407 71.3
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.5e-162 575.9 409 68.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 2.5e-162 575.9 410 69.3
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.3e-162 575.5 410 69.8
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 7.3e-162 574.3 406 69.0
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-161 572.8 406 68.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.8e-161 572.4 408 69.1
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 6.2e-161 571.2 409 70.4
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 6.2e-161 571.2 406 69.0
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.2e-161 571.2 407 71.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 8.1e-161 570.9 409 68.7
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.4e-160 570.1 407 70.8
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.1e-160 568.9 404 69.1
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.1e-160 568.9 402 68.9
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.6e-159 565.8 439 66.1
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.6e-159 565.8 354 77.4
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.4e-159 565.5 408 68.9
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 4.4e-159 565.1 409 69.4
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 7.6e-159 564.3 403 70.7
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.3e-158 563.5 423 67.4
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.3e-158 563.5 407 68.1
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.7e-158 563.1 414 67.6
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.2e-158 562.8 409 68.2
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.9e-157 559.7 409 67.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.4e-157 559.3 408 68.9
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 4.2e-157 558.5 412 67.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.4e-157 558.1 412 67.7
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.4e-157 558.1 412 67.7
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.4e-157 558.1 412 67.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 9.3e-157 557.4 409 67.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 9.3e-157 557.4 412 67.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.2e-156 557.0 412 67.5
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.6e-156 556.6 410 69.5
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 2.3e-155 552.7 408 67.4
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 3.9e-155 552.0 408 67.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 3.9e-155 552.0 403 70.0
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.9e-155 552.0 408 67.6
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 6.6e-155 551.2 403 69.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 4.3e-154 548.5 412 67.0
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.3e-153 547.0 408 67.4
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.8e-153 545.8 409 66.7
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-152 543.9 406 68.5
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 9.0e-152 540.8 408 67.2
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.0e-151 539.7 406 65.8
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 2.6e-151 539.3 403 68.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 4.5e-151 538.5 494 59.1
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 5.8e-151 538.1 405 64.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 7.6e-151 537.7 403 67.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.7e-150 536.6 408 66.2
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.4e-149 533.5 408 64.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.2e-149 532.3 405 64.7
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 4.2e-149 531.9 356 72.8
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 7.1e-149 531.2 405 64.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.5e-148 528.9 408 65.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.4e-146 521.2 403 62.3
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.9e-142 508.4 409 63.1
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.9e-141 506.5 351 70.9
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.8e-139 500.0 313 78.6
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.0e-139 499.2 406 60.1
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.4e-133 480.3 405 59.0
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 7.4e-130 468.0 416 56.7
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.3e-123 446.4 315 70.8
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.1e-122 444.1 408 56.9
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 8.8e-115 417.9 376 57.2
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.7e-108 396.4 315 63.5
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.8e-105 385.6 412 51.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 8.2e-105 384.8 273 70.0
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.5e-103 379.0 267 70.4
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 3.4e-98 362.8 273 64.5
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 4.8e-97 359.0 420 45.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.9e-93 347.1 418 46.9
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.2e-90 337.8 408 50.2
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-83 313.5 411 42.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.5e-79 299.3 253 63.2
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.5e-77 293.5 445 40.2
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 5.6e-69 265.8 161 79.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 7.5e-66 255.4 176 71.0
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.4e-64 250.4 173 71.7
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.7e-62 244.2 213 57.3
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.5e-61 241.1 176 66.5
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 5.2e-59 232.6 176 61.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-50 204.9 193 53.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 5.8e-50 202.6 148 63.5
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 2.2e-49 200.7 134 71.6
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 3.2e-48 196.8 112 80.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 5.4e-48 196.1 345 34.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 7.6e-34 149.1 93 76.3
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 2.4e-27 127.5 97 63.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 6.0e-23 112.8 97 62.9
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 7.6e-18 95.9 84 63.1
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 2.2e-17 94.4 322 28.0
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.8e-17 93.6 70 62.9
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 9.7e-13 79.0 57 73.7


User provided reference genes

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