Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.9e-185 651.7 330 100.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.5e-136 490.0 323 74.9
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.9e-129 465.3 324 71.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 6.6e-129 464.5 324 71.0
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.9e-128 463.0 324 71.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 5.6e-128 461.5 324 68.8
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 9.5e-128 460.7 324 69.1
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.2e-127 460.3 313 72.2
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 4.7e-127 458.4 324 69.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 8.1e-127 457.6 313 71.9
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.4e-126 456.8 313 71.6
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.8e-126 456.4 321 68.8
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.1e-126 455.7 324 68.5
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 8.9e-126 454.1 324 69.4
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-125 453.8 325 67.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 4.9e-124 448.4 327 67.6
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 6.4e-124 448.0 320 68.8
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 8.4e-124 447.6 313 69.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.4e-123 446.8 325 66.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.4e-123 446.8 313 71.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.4e-123 446.8 330 66.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.2e-123 445.7 322 68.0
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.2e-123 445.3 313 71.2
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.4e-123 444.9 330 66.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 7.1e-123 444.5 324 68.2
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.2e-122 443.7 322 68.6
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 2.1e-122 443.0 324 66.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.0e-122 441.4 351 64.7
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 7.8e-122 441.0 320 67.2
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.0e-121 440.7 320 67.5
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.9e-121 438.7 320 65.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.9e-121 438.7 316 69.6
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-120 437.2 324 66.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.5e-120 436.8 333 65.5
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.9e-120 436.4 324 66.0
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.9e-120 436.4 324 67.0
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.5e-120 436.0 338 65.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.5e-120 436.0 314 69.1
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 4.3e-120 435.3 320 68.1
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 9.6e-120 434.1 322 67.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.1e-119 433.0 325 64.3
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.1e-119 433.0 318 67.3
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.8e-119 431.8 320 66.9
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.2e-119 431.4 324 65.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.1e-119 431.0 328 65.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.4e-118 430.3 320 68.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-118 430.3 303 69.6
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.4e-118 429.5 320 65.6
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 9.0e-118 427.6 323 65.0
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.5e-117 426.8 277 75.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 2.0e-117 426.4 319 67.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.0e-117 426.4 303 68.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.6e-117 426.0 322 65.2
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 5.8e-117 424.9 303 68.3
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 7.6e-117 424.5 351 62.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 9.9e-117 424.1 324 65.1
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.8e-116 422.2 345 62.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.9e-116 421.8 323 65.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.1e-115 420.6 312 65.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.1e-115 420.6 323 64.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.4e-115 420.2 305 68.5
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 5.4e-115 418.3 305 68.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 7.1e-115 417.9 317 64.7
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.2e-114 417.2 347 61.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.7e-114 416.0 306 67.3
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 6.0e-114 414.8 329 61.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 6.0e-114 414.8 323 64.1
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.0e-114 414.8 321 62.6
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.3e-113 412.9 350 60.9
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.9e-113 412.1 323 62.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 5.1e-113 411.8 312 64.7
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 8.7e-113 411.0 275 72.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.7e-113 411.0 323 65.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 8.7e-113 411.0 321 62.0
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.9e-112 409.8 310 65.8
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 4.3e-112 408.7 324 60.5
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.3e-111 407.1 313 61.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.6e-111 406.8 312 64.1
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.1e-111 406.4 324 61.1
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.1e-111 406.4 322 62.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.8e-111 406.0 322 65.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.2e-111 404.8 392 55.4
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 3.1e-110 402.5 293 67.9
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.1e-110 402.5 308 64.3
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 4.0e-110 402.1 312 64.1
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 4.0e-110 402.1 323 61.0
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.4e-109 399.1 309 63.8
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.7e-108 396.7 310 63.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.9e-108 396.0 312 64.1
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 6.4e-108 394.8 310 63.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-107 393.7 325 63.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-107 393.3 368 56.0
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.9e-107 393.3 323 61.6
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.2e-107 392.5 309 64.1
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 4.2e-107 392.1 310 63.2
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.2e-107 392.1 279 70.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.4e-107 391.7 303 63.4
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.6e-106 388.7 312 62.5
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 4.6e-106 388.7 318 63.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 7.9e-106 387.9 273 68.9
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.9e-106 387.9 354 55.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.3e-105 387.1 273 69.2
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.3e-105 387.1 308 64.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-105 386.7 276 67.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.8e-105 386.7 335 59.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.0e-105 386.0 247 75.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 3.3e-104 382.5 310 61.6
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 4.3e-104 382.1 324 60.5
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 9.6e-104 380.9 306 62.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 4.8e-103 378.6 282 66.3
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.8e-103 378.6 310 61.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.8e-102 376.7 325 60.6
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 6.9e-102 374.8 311 60.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-101 373.2 322 59.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.5e-101 372.1 266 69.9
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.2e-98 364.0 312 58.7
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 6.7e-97 358.2 251 68.9
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.3e-96 355.5 325 56.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 9.0e-94 347.8 302 56.0
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.6e-93 346.3 316 55.7
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.9e-92 342.8 321 55.8
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.6e-90 337.0 313 59.4
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.3e-88 328.9 323 54.2
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 7.2e-83 311.6 229 66.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 6.1e-82 308.5 232 64.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.4e-78 297.4 457 41.4
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.0e-77 293.5 308 51.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.5e-75 286.6 201 69.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.4e-72 275.8 310 50.0
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.5e-68 261.5 211 64.5
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 3.9e-65 252.7 177 71.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.7e-63 246.1 186 65.1
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.1e-62 243.0 163 70.6
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 5.9e-61 238.8 180 65.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.9e-60 236.5 186 63.4
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.5e-60 235.3 270 50.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 7.2e-59 231.9 317 44.2
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.2e-58 231.1 214 58.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.1e-58 230.3 297 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 8.0e-58 228.4 188 59.0
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.0e-57 226.5 188 62.2
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-56 223.8 248 50.0
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.0e-52 211.5 171 64.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.3e-52 211.1 221 49.3
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 3.2e-51 206.5 286 42.3
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.7e-50 203.4 148 67.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.0e-50 201.8 195 55.9
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 4.0e-49 199.5 142 71.1
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 7.5e-48 195.3 139 64.0
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.3e-47 194.5 132 72.0
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-47 194.1 226 48.7
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.8e-47 193.4 150 62.7
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.5e-45 186.4 280 42.1
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.3e-43 179.9 129 76.0
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.0e-41 172.9 149 60.4
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-40 171.0 121 64.5
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 5.7e-40 169.1 115 67.8
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.2e-37 161.4 181 43.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.6e-34 149.8 182 46.2
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.4e-30 137.9 142 55.6
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.4e-30 136.0 142 53.5
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 7.3e-27 125.6 113 58.4
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.2e-23 114.0 116 54.3
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-19 100.5 67 70.1
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 6.2e-18 95.9 83 57.8
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.0e-16 90.9 83 55.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.9e-15 87.0 46 89.1
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-13 80.9 93 48.4
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.7e-13 80.5 85 49.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-12 77.0 92 45.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.5e-11 74.7 65 56.9
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 6.2e-10 69.3 65 52.3


User provided reference genes

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