Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.2e-181 636.7 313 100.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.8e-169 598.6 314 94.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 2.1e-145 519.2 313 81.8
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 3.1e-144 515.4 311 80.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 4.0e-144 515.0 313 81.8
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 5.8e-143 511.1 311 80.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.2e-142 509.2 313 80.8
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.8e-142 508.4 314 80.3
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.9e-142 508.1 313 80.5
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.5e-142 507.7 313 80.2
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.5e-142 507.7 313 80.2
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 6.5e-142 507.7 313 80.2
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.5e-141 505.8 305 81.6
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.5e-141 504.6 313 78.6
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 5.5e-141 504.6 313 79.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 7.1e-141 504.2 313 78.3
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 7.1e-141 504.2 305 80.3
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 9.3e-141 503.8 317 78.2
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 9.3e-141 503.8 311 80.4
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.2e-140 503.4 304 80.6
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.1e-140 502.7 310 79.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.7e-140 502.3 306 78.4
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 7.9e-140 500.7 313 78.0
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.0e-139 498.8 311 79.1
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 3.9e-139 498.4 313 78.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 6.7e-139 497.7 313 79.2
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.1e-138 496.9 314 79.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 3.3e-138 495.4 309 79.3
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 9.7e-138 493.8 310 78.4
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 9.7e-138 493.8 331 74.6
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.2e-137 492.7 313 78.3
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.2e-137 492.7 311 77.8
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.7e-137 491.9 313 78.6
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 6.3e-137 491.1 307 79.2
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.3e-136 488.0 311 76.5
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 9.0e-136 487.3 311 78.5
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 9.0e-136 487.3 313 78.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.2e-135 486.9 312 76.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.5e-135 486.5 313 77.6
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.6e-135 485.7 314 78.3
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.4e-135 485.3 313 75.1
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.9e-135 484.6 312 77.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.9e-135 484.6 313 77.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 7.6e-135 484.2 312 76.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-134 483.4 312 76.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-134 483.0 313 77.6
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.7e-134 483.0 315 75.6
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.2e-134 482.6 311 76.2
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.9e-134 482.3 310 77.7
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 77.7
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 5.0e-134 481.5 305 78.0
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-134 480.7 313 77.0
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.5e-133 479.2 312 75.6
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.5e-133 479.2 313 75.4
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 9.4e-133 477.2 311 74.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 9.4e-133 477.2 302 76.2
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 9.4e-133 477.2 313 74.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.2e-132 476.9 311 74.0
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.6e-132 476.5 316 75.6
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.6e-132 476.5 313 74.4
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.1e-132 476.1 310 76.8
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.6e-132 474.9 313 75.1
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 6.1e-132 474.6 311 73.6
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 7.9e-132 474.2 313 74.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-131 473.8 307 76.9
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.0e-131 473.8 315 74.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.8e-131 473.0 310 76.5
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.3e-131 472.6 313 74.8
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.3e-131 472.6 311 76.2
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.0e-131 472.2 325 73.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.1e-131 471.5 313 74.1
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 8.8e-131 470.7 310 76.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.5e-130 469.9 297 78.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.5e-130 469.9 311 75.9
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.9e-130 469.5 310 75.8
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.9e-130 469.5 313 76.4
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 4.3e-130 468.4 321 72.3
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.7e-130 468.0 310 75.8
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 7.4e-130 467.6 317 73.5
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 9.7e-130 467.2 317 73.8
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 9.7e-130 467.2 311 75.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 9.7e-130 467.2 313 74.1
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.7e-129 466.5 313 75.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.8e-129 465.7 310 76.5
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 8.2e-129 464.2 310 75.5
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.4e-128 463.4 320 73.1
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 9.1e-128 460.7 283 80.2
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 3.4e-127 458.8 312 74.4
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.5e-127 458.4 331 69.2
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 5.9e-127 458.0 320 71.6
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.9e-126 455.7 334 70.4
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.5e-126 454.1 273 82.1
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 4.2e-125 451.8 323 70.3
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 7.2e-125 451.1 318 70.8
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-124 450.3 323 70.0
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.2e-124 450.3 323 70.0
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.1e-124 448.0 300 73.3
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 6.1e-124 448.0 312 73.1
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 7.9e-124 447.6 311 72.0
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.3e-123 446.0 330 68.5
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 3.0e-123 445.7 317 70.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 6.7e-123 444.5 283 76.7
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.7e-121 439.9 265 80.8
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 4.5e-119 431.8 312 71.2
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 2.0e-114 416.4 326 65.3
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.3e-114 415.6 323 65.0
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 5.7e-114 414.8 264 76.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.3e-113 413.7 321 65.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.2e-110 402.9 313 65.5
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 6.5e-110 401.4 221 88.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-109 399.4 300 68.0
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.7e-108 396.0 307 66.8
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.2e-107 391.7 306 66.3
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 4.5e-103 378.6 313 65.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 5.9e-103 378.3 229 76.9
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.2e-101 372.5 309 64.4
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 7.2e-101 371.3 309 64.4
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.6e-100 370.2 319 63.3
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.1e-100 369.8 337 56.7
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.6e-100 369.0 224 78.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 2.8e-97 359.4 309 60.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.9e-86 322.8 204 77.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-85 319.7 226 70.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-84 316.6 235 64.7
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 4.4e-82 308.9 324 54.0
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 6.2e-76 288.5 208 71.2
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 5.2e-75 285.4 165 84.8
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 9.8e-74 281.2 324 49.1
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 3.7e-73 279.3 233 60.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 9.2e-72 274.6 156 85.9
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.6e-68 262.7 361 43.5
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.5e-66 257.3 171 77.2
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 7.8e-63 245.0 174 70.7
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.0e-62 244.6 150 80.7
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.1e-60 236.9 164 70.1
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-56 222.6 133 78.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 5.3e-51 205.7 290 42.4
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.9e-49 199.1 112 83.0
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-46 189.5 115 77.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 6.6e-46 188.7 239 48.5
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-45 187.2 115 76.5
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-45 185.3 115 76.5
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.6e-45 184.9 115 76.5
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.6e-45 184.9 115 76.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 2.1e-44 183.7 131 70.2
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-44 183.3 115 76.5
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-44 183.0 115 76.5
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-44 183.0 115 75.7
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.8e-44 182.6 109 78.9
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-43 179.1 115 73.9
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.8e-42 175.6 290 44.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.9e-42 174.9 158 62.0
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-38 164.9 93 83.9
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 6.2e-36 155.6 96 76.0
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.1e-35 154.8 96 75.0
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 4.5e-34 149.4 93 78.5
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.5e-32 142.5 137 59.1
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.1e-30 136.0 83 75.9
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.5e-26 124.4 95 64.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.5e-26 124.4 95 64.2
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-22 109.8 64 84.4
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-22 108.6 64 84.4
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-19 100.9 94 61.7
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.1e-19 100.1 94 62.8
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 6.9e-19 99.0 77 64.9
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-18 98.2 94 59.6
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.0e-18 97.4 74 68.9
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.0e-17 95.1 50 88.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.0e-17 95.1 50 88.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-17 93.6 50 86.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.9e-17 93.6 50 86.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.9e-17 93.6 47 89.4
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-16 91.3 108 52.8
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.7e-15 87.0 224 28.6
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.7e-12 77.8 79 55.7
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.8e-12 76.3 62 54.8
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 2.2e-09 67.4 122 40.2
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 5.5e-08 62.8 69 56.5
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 2.7e-07 60.5 153 32.7


User provided reference genes

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