Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 6.5e-82 307.4 158 100.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.5e-25 120.2 153 54.9
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.8e-23 111.3 155 48.4
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.0e-22 109.8 146 54.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.2e-19 100.5 151 47.0
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.6e-19 98.6 152 45.4
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.9e-17 93.2 156 40.4
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.3e-17 92.0 147 45.6
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.6e-17 91.7 149 45.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.6e-16 90.1 153 43.1
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.1e-16 89.7 156 41.0
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.6e-16 89.0 165 37.6
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-15 87.4 149 43.0
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-15 87.0 139 43.2
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.3e-15 86.3 153 43.1
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.0e-15 85.5 170 40.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 5.2e-15 85.1 150 45.3
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.4e-14 82.4 157 37.6
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.4e-14 82.4 173 40.5
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 7.5e-14 81.3 153 39.9
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 9.8e-14 80.9 133 42.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.7e-13 80.1 158 37.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.7e-13 80.1 141 41.1
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 3.7e-13 79.0 161 37.3
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 6.4e-13 78.2 151 39.1
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.4e-12 77.0 147 37.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.9e-12 76.6 147 37.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-12 76.6 150 38.0
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 3.2e-12 75.9 151 36.4
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.2e-12 75.9 151 39.7
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.2e-12 75.9 161 36.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.1e-12 75.5 144 38.9
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 4.1e-12 75.5 158 38.0
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 7.1e-12 74.7 158 35.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 1.2e-11 73.9 145 36.6
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.1e-11 73.2 153 41.2
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 2.7e-11 72.8 60 71.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 3.5e-11 72.4 145 39.3
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 3.5e-11 72.4 144 37.5
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 6.0e-11 71.6 135 42.2
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.8e-11 71.2 90 47.8
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.0e-10 70.9 162 34.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.7e-10 70.1 146 36.3
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.7e-10 70.1 55 67.3
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 2.3e-10 69.7 131 38.9
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 3.0e-10 69.3 145 35.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 3.0e-10 69.3 53 67.9
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 3.9e-10 68.9 55 65.5
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.9e-10 68.9 150 36.0
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 5.1e-10 68.6 139 39.6
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 6.6e-10 68.2 162 34.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.6e-10 68.2 121 39.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 6.6e-10 68.2 145 40.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.6e-10 68.2 45 77.8
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 8.6e-10 67.8 98 44.9
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-09 67.4 63 61.9
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.1e-09 67.4 63 61.9
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.1e-09 67.4 44 79.5
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.9e-09 66.6 147 38.1
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-09 66.6 69 62.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-09 66.6 69 62.3
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.5e-09 66.2 90 47.8
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 2.5e-09 66.2 117 40.2
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.5e-09 66.2 70 58.6
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.5e-09 66.2 70 58.6
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 3.3e-09 65.9 150 36.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.3e-09 65.9 75 53.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.3e-09 65.9 158 34.2
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.3e-09 65.9 146 35.6
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.3e-09 65.9 60 61.7
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 4.3e-09 65.5 133 37.6
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.3e-09 65.5 70 58.6
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.3e-09 65.5 123 41.5
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.3e-09 65.5 131 37.4
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 5.6e-09 65.1 65 58.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 7.3e-09 64.7 40 87.5
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 7.3e-09 64.7 142 38.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 9.5e-09 64.3 71 54.9
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 9.5e-09 64.3 51 66.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.5e-09 64.3 45 73.3
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 9.5e-09 64.3 146 39.0
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 9.5e-09 64.3 56 60.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.2e-08 63.9 139 37.4
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.2e-08 63.9 45 77.8
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-08 63.9 148 32.4
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-08 63.9 44 72.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.2e-08 63.9 147 38.8
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.2e-08 63.9 138 34.8
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.2e-08 63.9 138 34.8
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.1e-08 63.2 75 50.7
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.1e-08 63.2 135 40.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.1e-08 63.2 137 36.5
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 2.1e-08 63.2 58 62.1
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 2.8e-08 62.8 50 72.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.8e-08 62.8 137 35.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-08 62.8 75 52.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.8e-08 62.8 144 34.7
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 2.8e-08 62.8 129 41.9
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-08 62.8 53 64.2
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 4.7e-08 62.0 135 39.3
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.2e-08 61.6 44 68.2
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 8.1e-08 61.2 54 61.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 8.1e-08 61.2 111 45.0
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.1e-08 61.2 144 34.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.1e-07 60.8 46 78.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.1e-07 60.8 51 68.6
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.4e-07 60.5 139 35.3
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.4e-07 60.5 51 64.7
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.4e-07 60.5 152 33.6
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.4e-07 60.5 104 39.4
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.8e-07 60.1 47 68.1
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.8e-07 60.1 46 67.4
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.8e-07 60.1 53 66.0
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 1.8e-07 60.1 65 50.8
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.8e-07 60.1 74 52.7
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.8e-07 60.1 46 65.2
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.8e-07 60.1 39 82.1
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-07 60.1 138 36.2
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.8e-07 60.1 56 55.4
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.3e-07 59.7 107 40.2
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 2.3e-07 59.7 68 55.9
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.3e-07 59.7 48 62.5
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.3e-07 59.7 71 50.7
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.3e-07 59.7 75 41.3
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 2.3e-07 59.7 48 66.7
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 3.1e-07 59.3 51 68.6
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.1e-07 59.3 143 34.3
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 3.1e-07 59.3 56 62.5
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 4.0e-07 58.9 61 60.7
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 4.0e-07 58.9 42 69.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 4.0e-07 58.9 58 53.4
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.2e-07 58.5 85 42.4
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.2e-07 58.5 140 32.9
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 5.2e-07 58.5 136 34.6
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 5.2e-07 58.5 69 47.8
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 5.2e-07 58.5 151 33.1
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 6.8e-07 58.2 63 46.0
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 6.8e-07 58.2 58 58.6
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.8e-07 58.2 44 70.5
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 8.9e-07 57.8 164 32.3
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.4 48 64.6
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.4 115 39.1
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.2e-06 57.4 149 34.2
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.2e-06 57.4 57 64.9
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 1.5e-06 57.0 55 58.2
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.5e-06 57.0 112 39.3
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.5e-06 57.0 60 56.7
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-06 57.0 150 35.3
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 1.5e-06 57.0 119 37.0
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-06 56.6 40 72.5
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 2.0e-06 56.6 44 65.9
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.0e-06 56.6 46 63.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.0e-06 56.6 52 63.5
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.6e-06 56.2 48 68.8
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.6e-06 56.2 48 68.8
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 2.6e-06 56.2 57 63.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.6e-06 56.2 57 63.2
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 2.6e-06 56.2 52 61.5
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.4e-06 55.8 60 55.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.4e-06 55.8 60 55.0
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 3.4e-06 55.8 58 53.4
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.4e-06 55.5 51 60.8
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.4e-06 55.5 129 34.9
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 4.4e-06 55.5 46 65.2
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 4.4e-06 55.5 56 53.6
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 60 55.0
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 60 55.0
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 5.8e-06 55.1 40 70.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 5.8e-06 55.1 40 70.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.8e-06 55.1 47 59.6
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 5.8e-06 55.1 63 49.2
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 5.8e-06 55.1 67 47.8
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 5.8e-06 55.1 60 53.3
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 5.8e-06 55.1 50 62.0
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 7.6e-06 54.7 40 70.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 7.6e-06 54.7 58 53.4
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 7.6e-06 54.7 55 54.5
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 7.6e-06 54.7 60 55.0
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 9.9e-06 54.3 127 35.4
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 9.9e-06 54.3 78 47.4
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 9.9e-06 54.3 79 43.0
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 9.9e-06 54.3 51 56.9
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 9.9e-06 54.3 51 56.9


User provided reference genes

Program Settings