Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00368 Aquilegia oxysepala HOM05D002829 ORTHO05D003124 2.0e-80 302.4 152 100.0
Atru.chr3.2771 Acer truncatum HOM05D002829 ORTHO05D003124 1.6e-24 116.7 105 60.0
Nn7g36674 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.7e-23 113.2 106 60.4
QL01p017384 Quercus lobata HOM05D002829 ORTHO05D003124 6.5e-23 111.3 115 55.7
Sabra09G0053800 Salix brachista HOM05D002829 ORTHO05D003124 6.5e-23 111.3 103 60.2
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 1.1e-22 110.5 99 58.6
Cfa009847 Carpinus fangiana HOM05D002829 ORTHO05D003124 2.5e-22 109.4 104 57.7
PGR119G1580 Punica granatum HOM05D002829 ORTHO05D003124 3.2e-22 109.0 112 52.7
Sabra16G0170300 Salix brachista HOM05D002829 ORTHO05D003124 3.2e-22 109.0 107 57.9
Thecc.09G249600 Theobroma cacao HOM05D002829 ORTHO05D003124 4.2e-22 108.6 102 58.8
Duzib265G0001 Durio zibethinus HOM05D002829 ORTHO05D003124 5.5e-22 108.2 105 58.1
Manes.02G139900 Manihot esculenta HOM05D002829 ORTHO05D003124 5.5e-22 108.2 101 59.4
Cpa.g.sc482.1 Carica papaya HOM05D002829 ORTHO05D003124 7.2e-22 107.8 105 57.1
Oeu030630.1 Olea europaea HOM05D002829 ORTHO05D003124 9.5e-22 107.5 105 55.2
GSVIVG01037265001 Vitis vinifera HOM05D002829 ORTHO05D003124 1.2e-21 107.1 105 57.1
Potri.001G276400 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.6e-21 106.7 103 57.3
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 1.6e-21 106.7 97 57.7
Duzib150G0976 Durio zibethinus HOM05D002829 ORTHO05D003124 2.1e-21 106.3 105 57.1
Oeu001330.1 Olea europaea HOM05D002829 ORTHO05D003124 2.1e-21 106.3 105 56.2
Potri.009G071100 Populus trichocarpa HOM05D002829 ORTHO05D003124 2.1e-21 106.3 103 58.3
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 2.8e-21 105.9 108 54.6
Duzib168G0270 Durio zibethinus HOM05D002829 ORTHO05D003124 2.8e-21 105.9 105 58.1
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 6.1e-21 104.8 122 47.5
COL.COLO4_06524 Corchorus olitorius HOM05D002829 ORTHO05D003124 6.1e-21 104.8 90 60.0
FvH4_3g27940 Fragaria vesca HOM05D002829 ORTHO05D003124 8.0e-21 104.4 92 59.8
FAN11G2404 Fragaria x ananassa HOM05D002829 ORTHO05D003124 8.0e-21 104.4 92 59.8
Gohir.A05G071400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 8.0e-21 104.4 116 53.4
Gohir.D05G074300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 8.0e-21 104.4 116 53.4
RcHm_v2.0_Chr5g0050661 Rosa chinensis HOM05D002829 ORTHO05D003124 8.0e-21 104.4 103 56.3
FAN16G1561 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.0e-20 104.0 92 58.7
Gohir.A07G120300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.0e-20 104.0 103 58.3
Gohir.D07G124500 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.0e-20 104.0 103 58.3
Gorai.001G134300 Gossypium raimondii HOM05D002829 ORTHO05D003124 1.0e-20 104.0 103 58.3
TAR369G0681 Trochodendron aralioides HOM05D002829 ORTHO05D003124 1.4e-20 103.6 107 57.0
AT5G12340 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.8e-20 103.2 110 50.0
Phvul.006G030200 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 1.8e-20 103.2 114 51.8
Prupe.4G267600 Prunus persica HOM05D002829 ORTHO05D003124 1.8e-20 103.2 100 57.0
AL6G23140 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 3.0e-20 102.4 110 50.0
Glyma.18G118300 Glycine max HOM05D002829 ORTHO05D003124 3.0e-20 102.4 111 50.5
Gorai.009G075400 Gossypium raimondii HOM05D002829 ORTHO05D003124 3.0e-20 102.4 116 52.6
Sed0001383 Sechium edule HOM05D002829 ORTHO05D003124 4.0e-20 102.1 94 57.4
FAN21G1998 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.2e-20 101.7 92 57.6
C02p05710 Brassica napus HOM05D002829 ORTHO05D003124 6.8e-20 101.3 99 55.6
BolC2t06515H Brassica oleracea HOM05D002829 ORTHO05D003124 6.8e-20 101.3 99 55.6
CsaV3_1G043320 Cucumis sativus L. HOM05D002829 ORTHO05D003124 6.8e-20 101.3 90 58.9
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 6.8e-20 101.3 104 51.0
BcaNung03622 Brassica carinata HOM05D002829 ORTHO05D003124 8.8e-20 100.9 114 50.0
BcaNung01195 Brassica carinata HOM05D002829 ORTHO05D003124 1.2e-19 100.5 99 55.6
C02p05700 Brassica napus HOM05D002829 ORTHO05D003124 1.2e-19 100.5 99 55.6
BolC2t06514H Brassica oleracea HOM05D002829 ORTHO05D003124 1.2e-19 100.5 99 55.6
ClCG03G012660 Citrullus lanatus HOM05D002829 ORTHO05D003124 1.2e-19 100.5 90 57.8
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 1.2e-19 100.5 107 52.3
VMungo0540G0048 Vigna mungo HOM05D002829 ORTHO05D003124 1.2e-19 100.5 114 50.9
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.5e-19 100.1 111 53.2
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 1.5e-19 100.1 97 57.7
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 1.5e-19 100.1 105 54.3
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 1.5e-19 100.1 117 50.4
CSS0010856 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 2.0e-19 99.8 110 50.0
Thhalv10015959m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 3.4e-19 99.0 114 49.1
Lalb_Chr04g0249191 Lupinus albus HOM05D002829 ORTHO05D003124 3.4e-19 99.0 117 53.0
Glyma.08G301600 Glycine max HOM05D002829 ORTHO05D003124 4.4e-19 98.6 117 47.9
Lalb_Chr17g0347961 Lupinus albus HOM05D002829 ORTHO05D003124 4.4e-19 98.6 90 58.9
MD11G1186400 Malus domestica HOM05D002829 ORTHO05D003124 4.4e-19 98.6 100 56.0
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 4.4e-19 98.6 109 53.2
Sp6g31300 Schrenkiella parvula HOM05D002829 ORTHO05D003124 4.4e-19 98.6 97 54.6
Sopen04g025670 Solanum pennellii HOM05D002829 ORTHO05D003124 4.4e-19 98.6 127 47.2
TAR623G1065 Trochodendron aralioides HOM05D002829 ORTHO05D003124 4.4e-19 98.6 118 52.5
A10p25480 Brassica napus HOM05D002829 ORTHO05D003124 5.7e-19 98.2 108 50.9
C09p64560 Brassica napus HOM05D002829 ORTHO05D003124 5.7e-19 98.2 108 50.9
BraA10t44612Z Brassica rapa HOM05D002829 ORTHO05D003124 5.7e-19 98.2 108 50.9
MD03G1167500 Malus domestica HOM05D002829 ORTHO05D003124 5.7e-19 98.2 99 55.6
Solyc04g057830.1 Solanum lycopersicum HOM05D002829 ORTHO05D003124 7.5e-19 97.8 127 46.5
BcaNung03623 Brassica carinata HOM05D002829 ORTHO05D003124 9.8e-19 97.4 97 53.6
PSO339G3894 Papaver somniferum HOM05D002829 ORTHO05D003124 9.8e-19 97.4 104 52.9
MELO3C015127.2 Cucumis melo HOM05D002829 ORTHO05D003124 1.3e-18 97.1 90 56.7
Glyma.08G301500 Glycine max HOM05D002829 ORTHO05D003124 1.3e-18 97.1 94 54.3
Lj1P286T7 Lonicera japonica HOM05D002829 ORTHO05D003124 1.3e-18 97.1 110 52.7
arahy.Tifrunner.gnm1.ann1.9SET9D Arachis hypogaea HOM05D002829 ORTHO05D003124 1.7e-18 96.7 91 58.2
arahy.Tifrunner.gnm1.ann1.Z08FR7 Arachis hypogaea HOM05D002829 ORTHO05D003124 1.7e-18 96.7 91 58.2
SalBow6G5405 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.7e-18 96.7 90 57.8
A02p01480 Brassica napus HOM05D002829 ORTHO05D003124 2.2e-18 96.3 98 55.1
BraA02t05127Z Brassica rapa HOM05D002829 ORTHO05D003124 2.2e-18 96.3 98 55.1
Glyma.14G034700 Glycine max HOM05D002829 ORTHO05D003124 2.2e-18 96.3 106 53.8
Peaxi162Scf00994g00001 Petunia axillaris HOM05D002829 ORTHO05D003124 4.9e-18 95.1 110 51.8
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 6.3e-18 94.7 101 52.5
Sed0021871 Sechium edule HOM05D002829 ORTHO05D003124 6.3e-18 94.7 94 53.2
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 1.1e-17 94.0 137 41.6
Glyma.02G280100 Glycine max HOM05D002829 ORTHO05D003124 1.4e-17 93.6 108 51.9
PGSC0003DMG400016928 Solanum tuberosum HOM05D002829 ORTHO05D003124 1.4e-17 93.6 107 51.4
TPR.G19349 Trifolium pratense HOM05D002829 ORTHO05D003124 1.4e-17 93.6 101 53.5
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 1.8e-17 93.2 95 55.8
MBI19_g31856_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.8e-17 93.2 106 52.8
Eucgr.B03728 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.4e-17 92.8 105 50.5
HanXRQChr14g0432431 Helianthus annuus HOM05D002829 ORTHO05D003124 4.1e-17 92.0 110 49.1
Duzib170G0965 Durio zibethinus HOM05D002829 ORTHO05D003124 5.4e-17 91.7 92 56.5
Sed0020414 Sechium edule HOM05D002829 ORTHO05D003124 7.0e-17 91.3 94 51.1
Manes.01G179200 Manihot esculenta HOM05D002829 ORTHO05D003124 1.2e-16 90.5 90 56.7
AUR62000184 Chenopodium quinoa HOM05D002829 ORTHO05D003124 1.6e-16 90.1 98 51.0
MBI13_g17977_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.6e-16 90.1 97 53.6
MBI13_g46995_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 2.0e-16 89.7 97 55.7
Medtr5g089820 Medicago truncatula HOM05D002829 ORTHO05D003124 2.0e-16 89.7 101 52.5
Nn2g14835 Nelumbo nucifera HOM05D002829 ORTHO05D003124 2.0e-16 89.7 91 57.1
BolC9t59289H Brassica oleracea HOM05D002829 ORTHO05D003124 2.7e-16 89.4 101 50.5
Sc09g0000990 Simmondsia chinensis HOM05D002829 ORTHO05D003124 2.7e-16 89.4 91 52.7
Eucgr.J00699 Eucalyptus grandis HOM05D002829 ORTHO05D003124 4.5e-16 88.6 118 48.3
LjContig00049g0000214 Lotus japonicus HOM05D002829 ORTHO05D003124 4.5e-16 88.6 90 58.9
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 4.5e-16 88.6 93 50.5
Phvul.008G200600 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 4.5e-16 88.6 101 50.5
SalBow6G1572 Salvia bowleyana HOM05D002829 ORTHO05D003124 5.9e-16 88.2 94 52.1
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 7.8e-16 87.8 79 58.2
Actinidia16376 Actinidia chinensis HOM05D002829 ORTHO05D003124 1.0e-15 87.4 124 45.2
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 1.0e-15 87.4 80 57.5
Lsat_1_v5_gn_2_33560 Lactuca sativa HOM05D002829 ORTHO05D003124 1.3e-15 87.0 92 51.1
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 1.7e-15 86.7 92 55.4
CDE09G1183 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 2.3e-15 86.3 95 47.4
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 2.3e-15 86.3 93 51.6
Eucgr.B03729 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.3e-15 86.3 106 50.0
Sed0010124 Sechium edule HOM05D002829 ORTHO05D003124 2.3e-15 86.3 91 54.9
Haze_23213 Corylus avellana HOM05D002829 ORTHO05D003124 3.8e-15 85.5 78 59.0
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 5.0e-15 85.1 92 53.3
THA.LOC104824621 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 1.1e-14 84.0 96 51.0
Aa31LG3G14890 Aethionema arabicum HOM05D002829 ORTHO05D003124 3.3e-14 82.4 92 46.7
EL10Ac4g10137 Beta vulgaris HOM05D002829 ORTHO05D003124 4.3e-14 82.0 126 41.3
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 9.5e-14 80.9 95 48.4
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 2.1e-13 79.7 127 40.9
DCAR_002104 Daucus carota HOM05D002829 ORTHO05D003124 2.8e-13 79.3 101 46.5
TPR.G8464 Trifolium pratense HOM05D002829 ORTHO05D003124 2.8e-13 79.3 82 53.7
Ca_25922_v3 Cicer arietinum L. HOM05D002829 ORTHO05D003124 6.1e-13 78.2 82 54.9
Medtr3g045790 Medicago truncatula HOM05D002829 ORTHO05D003124 6.1e-13 78.2 85 52.9
ATR0745G071 Amborella trichopoda HOM05D002829 ORTHO05D003124 1.0e-12 77.4 81 53.1
CARHR200770 Cardamine hirsuta HOM05D002829 ORTHO05D003124 1.8e-12 76.6 109 39.4
Psat5g194160 Pisum sativum HOM05D002829 ORTHO05D003124 3.0e-12 75.9 84 51.2
ECA238G1676 Erigeron canadensis HOM05D002829 ORTHO05D003124 5.2e-12 75.1 101 40.6
HanXRQChr14g0432451 Helianthus annuus HOM05D002829 ORTHO05D003124 8.9e-12 74.3 100 45.0
Zm00001eb394490 Zea mays HOM05D002829 ORTHO05D003124 1.2e-11 73.9 80 45.0
Os03g0356526 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 2.6e-11 72.8 115 40.9
Zm00001eb347100 Zea mays HOM05D002829 ORTHO05D003124 2.6e-11 72.8 96 45.8
Os05g0385400 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 3.4e-11 72.4 96 43.8
Os07g0659300 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 5.7e-11 71.6 108 38.9
EL10Ac4g10150 Beta vulgaris HOM05D002829 ORTHO05D003124 7.5e-11 71.2 115 39.1
Zm00001eb286970 Zea mays HOM05D002829 ORTHO05D003124 7.5e-11 71.2 94 45.7
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.7e-10 70.1 92 45.7
Migut.D00655 Erythranthe guttata HOM05D002829 ORTHO05D003124 4.9e-10 68.6 63 57.1
Zm00001eb110740 Zea mays HOM05D002829 ORTHO05D003124 8.3e-10 67.8 111 35.1
HPP92_006724 Vanilla planifolia HOM05D002829 ORTHO05D003124 3.2e-09 65.9 103 40.8
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 5.4e-09 65.1 98 45.9
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 9.2e-09 64.3 85 45.9
Zm00001eb140690 Zea mays HOM05D002829 ORTHO05D003124 1.6e-08 63.5 86 46.5
CDE09G0437 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 2.0e-08 63.2 91 40.7
THA.LOC104820537 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 2.7e-08 62.8 95 40.0
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 3.5e-08 62.4 101 38.6
SEGI_29550 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 1.0e-07 60.8 77 40.3
CDE02G1175 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 3.0e-07 59.3 78 44.9
PSO017G0067 Papaver somniferum HOM05D002829 ORTHO05D003124 3.0e-07 59.3 88 45.5
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 5.0e-07 58.5 93 39.8
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 5.0e-07 58.5 87 41.4
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 6.6e-07 58.2 123 34.1
FvH4_4g22140 Fragaria vesca HOM05D002829 ORTHO05D003124 1.1e-06 57.4 100 36.0
FAN12G1147 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.1e-06 57.4 100 36.0
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.1e-06 57.4 93 39.8
MD16G1144900 Malus domestica HOM05D002829 ORTHO05D003124 1.1e-06 57.4 107 34.6
PSO478G2462 Papaver somniferum HOM05D002829 ORTHO05D003124 1.1e-06 57.4 93 45.2
MBI07_g42014_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010528 1.5e-06 57.0 92 39.1
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 1.9e-06 56.6 94 39.4
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 1.9e-06 56.6 94 38.3
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.9e-06 56.6 93 38.7
MBI11_g17276_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.9e-06 56.6 97 38.1
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 2.5e-06 56.2 96 39.6
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 4.3e-06 55.5 111 34.2
FAN07G1465 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.6e-06 55.1 100 35.0
FAN17G0858 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.6e-06 55.1 100 35.0
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 5.6e-06 55.1 98 40.8
Aa31sc50G50 Aethionema arabicum HOM05D002829 ORTHO05D003124 7.3e-06 54.7 87 41.4
MD13G1134300 Malus domestica HOM05D002829 ORTHO05D003124 7.3e-06 54.7 115 30.4
Thecc.01G239500 Theobroma cacao HOM05D002829 ORTHO05D003124 7.3e-06 54.7 95 38.9
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 9.5e-06 54.3 94 36.2
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 9.5e-06 54.3 115 34.8
TWI18G0126 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 9.5e-06 54.3 96 35.4


User provided reference genes

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