Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 8.0e-140 500.4 244 100.0
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.2e-108 394.4 241 80.1
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-106 390.2 236 80.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.3e-77 292.0 238 60.9
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.3e-75 285.0 234 59.4
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 5.3e-75 285.0 234 59.8
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.5e-74 283.5 236 57.6
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.0e-74 283.1 234 62.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 7.7e-74 281.2 236 58.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.7e-73 280.0 242 56.2
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 8.5e-73 277.7 234 58.1
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.1e-72 277.3 245 56.3
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 9.4e-72 274.2 234 56.4
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.7e-71 272.7 241 55.6
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.7e-71 272.7 239 58.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 3.6e-71 272.3 233 58.8
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.9e-71 271.2 242 58.7
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.9e-71 271.2 242 58.7
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-70 270.0 236 55.5
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 3.9e-70 268.9 247 58.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 5.1e-70 268.5 236 57.6
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.7e-70 268.1 236 55.9
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.7e-70 268.1 249 53.8
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-69 266.5 242 56.6
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.6e-69 266.2 243 57.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.3e-69 265.8 234 57.3
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.7e-69 265.0 240 54.6
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 7.4e-69 264.6 241 52.3
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.4e-69 264.6 236 56.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 9.7e-69 264.2 234 55.6
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.7e-68 262.3 234 55.6
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 6.3e-68 261.5 235 55.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 8.2e-68 261.2 234 53.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-67 259.6 243 56.4
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.4e-67 259.6 235 54.0
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 3.1e-67 259.2 241 52.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.1e-67 258.8 239 54.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 5.3e-67 258.5 235 51.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 5.3e-67 258.5 233 54.5
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.0e-67 258.1 236 55.5
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.6e-66 256.1 231 54.5
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.4e-66 255.8 242 51.7
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.0e-65 254.2 233 53.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.3e-65 253.8 233 52.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.7e-65 253.4 235 51.1
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.2e-65 253.1 233 52.8
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 2.2e-65 253.1 235 51.5
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 3.8e-65 252.3 241 51.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 3.8e-65 252.3 236 53.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.0e-65 251.9 241 51.0
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 6.5e-65 251.5 243 51.4
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 8.5e-65 251.1 240 51.2
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.1e-64 250.8 235 53.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.4e-64 250.4 237 53.6
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.5e-64 249.6 236 51.3
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.2e-64 249.2 230 53.0
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.2e-64 249.2 233 54.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.2e-64 249.2 241 51.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.2e-64 249.2 233 51.5
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 4.2e-64 248.8 235 53.2
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.2e-64 248.8 235 53.2
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 5.5e-64 248.4 236 53.4
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 7.2e-64 248.1 231 51.1
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 7.2e-64 248.1 239 51.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 9.4e-64 247.7 190 62.1
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 9.4e-64 247.7 236 53.0
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.4e-64 247.7 214 58.9
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.1e-63 246.5 234 55.6
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.1e-63 246.5 240 52.9
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.0e-62 244.2 236 51.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.4e-62 243.8 239 52.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.8e-62 243.4 233 51.9
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 3.0e-62 242.7 231 52.8
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 3.9e-62 242.3 241 52.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 5.2e-62 241.9 232 50.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 8.8e-62 241.1 238 51.3
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.1e-61 240.7 239 50.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.5e-61 240.4 240 49.2
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-61 240.4 236 49.2
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.0e-61 240.0 236 52.5
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.6e-61 239.6 206 56.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 2.6e-61 239.6 217 54.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 4.4e-61 238.8 243 51.0
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 5.7e-61 238.4 235 49.4
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 9.7e-61 237.7 236 52.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.3e-60 237.3 236 52.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.7e-60 236.9 243 48.6
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.2e-60 236.5 230 50.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.2e-60 236.5 237 49.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.4e-59 233.8 237 51.9
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 2.4e-59 233.0 244 49.6
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.4e-59 233.0 239 51.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.4e-59 233.0 237 49.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 3.1e-59 232.6 236 51.3
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 4.5e-58 228.8 237 48.1
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 5.9e-58 228.4 236 50.4
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.3e-57 227.3 245 47.8
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.3e-57 227.3 244 47.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 2.2e-57 226.5 235 50.6
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.9e-57 226.1 203 59.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 3.8e-57 225.7 237 50.2
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.0e-57 225.3 240 49.2
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 6.5e-57 224.9 234 50.4
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 6.5e-57 224.9 236 47.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.5e-57 224.6 234 49.6
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.1e-56 224.2 232 50.4
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.9e-56 223.4 234 49.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-56 223.0 232 50.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.5e-56 223.0 206 54.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.2e-56 222.6 234 49.1
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 7.2e-56 221.5 234 50.0
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 7.2e-56 221.5 234 50.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 7.2e-56 221.5 237 46.8
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-55 220.7 239 50.2
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.6e-55 220.3 229 50.2
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 6.1e-55 218.4 236 47.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.5e-53 213.8 208 53.4
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.3e-53 212.6 235 46.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 4.4e-53 212.2 182 59.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 7.5e-53 211.5 209 50.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.8e-52 208.8 216 51.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.4e-51 207.2 220 50.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.8e-51 206.8 207 50.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.7e-50 203.0 235 46.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 7.7e-50 201.4 164 59.8
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.5e-48 197.2 190 51.6
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.5e-48 197.2 190 51.6
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 3.2e-48 196.1 208 47.6
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.7e-47 193.0 238 44.1
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 2.2e-44 183.3 257 42.0
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 6.3e-44 181.8 221 46.6
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.2e-42 177.6 243 39.5
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.0e-42 176.8 207 46.4
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.1e-40 171.0 213 44.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 4.4e-37 159.1 235 40.0
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 4.5e-34 149.1 170 49.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 8.6e-33 144.8 166 47.0
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 3.6e-31 139.4 145 51.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.9e-27 127.1 99 58.6
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.1e-24 117.9 131 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 5.6e-24 115.5 194 35.6
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.5e-24 114.8 90 58.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 3.6e-23 112.8 86 60.5
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.7e-23 112.5 101 55.4
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 8.9e-22 108.2 86 59.3
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 6.4e-20 102.1 138 40.6
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.3e-17 94.4 77 54.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.3e-17 93.6 249 29.3
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.8e-15 86.7 106 42.5
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 4.7e-15 85.9 113 38.1
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.3e-08 63.2 49 59.2
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 4.0e-06 56.2 44 59.1


User provided reference genes

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