Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 6.4e-241 837.0 429 100.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.3e-190 669.1 429 79.0
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 3.3e-189 665.2 429 77.4
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 4.3e-189 664.8 428 77.1
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.2e-186 656.8 430 76.7
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 6.5e-185 651.0 430 74.9
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.1e-184 650.2 419 75.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 3.2e-184 648.7 432 75.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 5.5e-184 647.9 432 76.2
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.6e-183 646.4 427 75.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.7e-183 645.6 414 77.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.0e-182 643.7 409 77.3
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.8e-182 642.9 409 77.3
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.8e-182 642.9 392 79.8
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 3.9e-182 641.7 419 74.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 8.8e-182 640.6 422 75.6
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.1e-181 640.2 429 74.8
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.7e-180 636.3 433 73.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.8e-180 635.6 430 74.7
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.4e-179 633.3 393 77.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.8e-179 632.9 400 77.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-179 632.5 397 76.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 6.9e-179 630.9 414 74.6
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 6.9e-179 630.9 423 72.3
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 9.1e-179 630.6 395 77.5
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.2e-178 630.2 413 75.8
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.5e-178 629.8 393 76.6
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 2.6e-178 629.0 405 75.3
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 5.9e-178 627.9 411 74.7
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 7.7e-178 627.5 423 73.0
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.0e-177 627.1 411 74.7
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.0e-177 627.1 408 76.0
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-177 626.7 416 73.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.3e-177 626.7 431 71.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.2e-177 625.9 408 75.7
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.9e-177 625.5 419 73.5
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 5.0e-177 624.8 393 76.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 5.0e-177 624.8 423 73.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 5.0e-177 624.8 393 76.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 5.0e-177 624.8 405 75.6
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 6.5e-177 624.4 395 77.2
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.1e-176 623.6 429 72.5
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.1e-176 623.6 419 74.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.4e-176 623.2 397 76.8
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.9e-176 622.9 434 71.0
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.9e-176 622.9 405 75.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.9e-176 622.9 393 76.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.5e-176 622.5 410 76.8
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.2e-176 622.1 423 73.0
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 4.2e-176 621.7 395 77.7
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 4.2e-176 621.7 415 72.5
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.5e-176 621.3 479 67.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.5e-176 621.3 392 76.3
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.1e-175 619.4 395 76.7
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.6e-175 618.6 431 71.2
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.6e-175 618.6 416 72.4
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 6.1e-175 617.8 392 75.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.4e-174 616.7 470 67.2
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.4e-174 616.7 426 71.4
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.4e-174 616.7 416 72.4
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.8e-174 616.3 393 75.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.8e-174 616.3 408 75.2
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 3.0e-174 615.5 433 70.0
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.0e-174 615.5 417 72.9
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.9e-174 615.1 405 74.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 6.7e-174 614.4 392 76.0
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 8.8e-174 614.0 429 71.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.1e-173 613.6 412 72.3
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 3.3e-173 612.1 433 69.5
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.4e-171 606.7 392 74.7
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.4e-171 605.9 396 74.0
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 4.1e-171 605.1 427 71.7
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.7e-169 599.7 433 69.1
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.7e-169 599.7 393 74.6
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.2e-169 599.4 433 69.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 5.5e-168 594.7 433 68.6
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 5.5e-168 594.7 433 68.6
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.5e-168 594.7 411 70.3
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 6.1e-167 591.3 407 72.2
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.8e-166 589.7 395 73.9
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.4e-165 584.3 349 81.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.4e-163 580.1 394 71.6
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.1e-163 577.4 349 80.5
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.7e-161 573.2 415 66.7
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 5.0e-161 571.6 381 75.6
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-159 566.6 411 69.3
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.1e-159 564.7 398 70.9
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 4.0e-158 562.0 443 66.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 9.1e-155 550.8 349 77.7
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.5e-154 548.9 558 54.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-152 542.7 423 61.7
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.0e-151 537.7 350 75.4
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.2e-148 529.6 344 73.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 6.3e-148 528.1 331 78.2
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.8e-147 526.6 408 66.4
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.1e-147 524.2 330 75.5
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.0e-146 523.1 415 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.3e-145 519.6 381 66.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 4.4e-141 505.4 373 64.6
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 9.8e-141 504.2 393 64.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.2e-138 497.3 388 61.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.3e-136 489.2 334 72.8
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.3e-136 488.8 395 65.1
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.6e-129 464.5 331 71.6
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.8e-127 459.5 334 68.3
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.8e-118 430.3 332 67.2
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.4e-117 426.0 373 55.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.5e-114 416.0 264 75.8
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.6e-114 415.6 291 72.2
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.4e-110 403.3 277 72.6
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.2e-107 392.9 320 60.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 9.2e-107 391.3 319 63.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 8.4e-100 368.2 228 75.9
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.1e-99 367.9 405 48.6
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.2e-90 337.8 399 44.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.7e-90 336.7 375 46.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 5.7e-64 249.2 170 64.7
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.1e-62 245.0 253 49.4
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.3e-55 221.5 251 51.4
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 5.9e-53 212.6 129 79.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-51 207.6 169 63.9
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 8.0e-50 202.2 187 58.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.0e-49 201.8 336 34.8
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-48 197.6 167 58.7
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.3e-48 196.8 122 76.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 7.7e-37 159.1 140 62.1
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.7e-28 131.3 84 75.0
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.8e-28 130.2 372 30.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.5e-27 127.5 95 69.5
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.8e-25 121.3 118 58.5
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 7.0e-22 109.4 90 65.6
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.7e-20 104.8 64 70.3
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.3e-15 88.6 86 58.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.4e-14 85.1 69 62.3
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.6e-13 81.6 62 64.5
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.0e-13 81.3 49 75.5
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.4e-08 63.9 44 63.6
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 4.9e-07 60.1 47 61.7
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.1e-06 58.9 56 51.8
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-06 58.5 40 70.0
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 4.1e-06 57.0 36 72.2


User provided reference genes

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