Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 6.3e-35 150.2 75 100.0
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 5.3e-34 147.1 75 98.7
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 5.3e-34 147.1 75 98.7
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 1.2e-17 92.8 69 65.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 5.9e-17 90.5 71 60.6
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-16 89.4 71 66.2
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.2e-16 88.6 69 63.8
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 2.9e-16 88.2 71 60.6
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 6.5e-16 87.0 71 59.2
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 8.5e-16 86.7 71 59.2
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 8.5e-16 86.7 69 62.3
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.5e-16 86.7 71 57.7
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.1e-15 86.3 71 62.0
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.1e-15 86.3 71 60.6
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-15 86.3 71 56.3
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.5e-15 85.9 71 62.0
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 1.5e-15 85.9 71 62.0
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.5e-15 85.9 68 64.7
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-15 85.5 69 60.9
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 2.5e-15 85.1 71 63.4
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 3.2e-15 84.7 69 60.9
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 3.2e-15 84.7 71 56.3
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 3.2e-15 84.7 71 57.7
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 4.2e-15 84.3 71 60.6
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 4.2e-15 84.3 69 63.8
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 4.2e-15 84.3 71 59.2
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 7.2e-15 83.6 71 59.2
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 7.2e-15 83.6 71 57.7
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 7.2e-15 83.6 71 59.2
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 7.2e-15 83.6 71 56.3
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 9.4e-15 83.2 68 61.8
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 9.4e-15 83.2 69 59.4
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 9.4e-15 83.2 69 63.8
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 9.4e-15 83.2 71 56.3
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.2e-14 82.8 71 56.3
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.2e-14 82.8 71 56.3
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.2e-14 82.8 71 59.2
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 1.2e-14 82.8 71 56.3
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 1.2e-14 82.8 71 57.7
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.2e-14 82.8 69 58.0
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-14 82.4 69 59.4
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 2.1e-14 82.0 71 60.6
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 2.1e-14 82.0 72 58.3
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-14 82.0 69 59.4
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.1e-14 82.0 71 56.3
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 2.1e-14 82.0 71 57.7
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.1e-14 82.0 71 57.7
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 2.7e-14 81.6 69 59.4
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.7e-14 81.6 71 57.7
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 2.7e-14 81.6 71 57.7
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 2.7e-14 81.6 71 57.7
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 3.6e-14 81.3 71 56.3
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.6e-14 81.3 71 56.3
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.6e-14 81.3 71 57.7
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.6e-14 81.3 71 57.7
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.6e-14 81.3 71 57.7
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.7e-14 80.9 71 54.9
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.7e-14 80.9 71 54.9
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 4.7e-14 80.9 71 57.7
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 4.7e-14 80.9 71 59.2
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 6.1e-14 80.5 71 56.3
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.1e-14 80.5 71 56.3
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 6.1e-14 80.5 67 56.7
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.0e-14 80.1 69 56.5
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 8.0e-14 80.1 68 58.8
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 8.0e-14 80.1 69 58.0
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 8.0e-14 80.1 71 56.3
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 8.0e-14 80.1 69 58.0
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-13 79.7 69 56.5
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 1.0e-13 79.7 71 54.9
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.0e-13 79.7 71 54.9
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.4e-13 79.3 71 57.7
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.4e-13 79.3 69 60.9
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.4e-13 79.3 71 56.3
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.8e-13 79.0 71 59.2
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.8e-13 79.0 71 57.7
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.8e-13 79.0 69 58.0
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.8e-13 79.0 69 58.0
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.8e-13 79.0 72 55.6
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-13 79.0 71 56.3
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-13 79.0 71 56.3
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.8e-13 79.0 71 56.3
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.3e-13 78.6 71 54.9
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-13 78.6 69 58.0
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.3e-13 78.6 71 54.9
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 3.0e-13 78.2 69 58.0
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 3.0e-13 78.2 69 55.1
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.0e-13 78.2 68 57.4
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 3.0e-13 78.2 71 56.3
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 4.0e-13 77.8 71 54.9
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 5.2e-13 77.4 69 58.0
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 6.8e-13 77.0 71 57.7
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 6.8e-13 77.0 71 57.7
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.8e-13 77.0 69 55.1
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.8e-13 76.6 71 53.5
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.8e-13 76.6 71 53.5
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 1.2e-12 76.3 71 57.7
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.2e-12 76.3 71 53.5
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.2e-12 76.3 69 56.5
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.2e-12 76.3 69 55.1
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-12 76.3 71 57.7
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.2e-12 76.3 71 57.7
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-12 76.3 68 55.9
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.2e-12 76.3 71 53.5
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.5e-12 75.9 71 57.7
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.5e-12 75.9 71 56.3
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 1.5e-12 75.9 69 53.6
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.5e-12 75.9 69 56.5
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.0e-12 75.5 68 58.8
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 3.4e-12 74.7 71 56.3
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 3.4e-12 74.7 71 56.3
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.4e-12 74.7 69 53.6
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 3.4e-12 74.7 71 52.1
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 5.7e-12 73.9 71 47.9
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 5.7e-12 73.9 71 47.9
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 5.7e-12 73.9 74 55.4
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 7.5e-12 73.6 71 54.9
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 7.5e-12 73.6 69 50.7
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 7.5e-12 73.6 69 50.7
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 9.7e-12 73.2 69 55.1
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 1.7e-11 72.4 71 47.9
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.7e-11 72.4 69 53.6
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.7e-11 72.4 71 50.7
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 2.2e-11 72.0 71 50.7
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-11 72.0 66 57.6
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.2e-11 72.0 71 50.7
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 2.8e-11 71.6 71 46.5
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 2.8e-11 71.6 71 46.5
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.7e-11 71.2 71 47.9
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 4.8e-11 70.9 71 47.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 6.3e-11 70.5 69 50.7
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 8.3e-11 70.1 71 47.9
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 8.3e-11 70.1 74 55.4
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 1.1e-10 69.7 69 49.3
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-10 69.7 71 50.7
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.1e-10 69.7 69 52.2
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.1e-10 69.7 69 52.2
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.8e-10 68.9 95 44.2
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.8e-10 68.9 88 44.3
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-10 68.6 68 52.9
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 3.1e-10 68.2 71 49.3
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 7.0e-10 67.0 68 50.0
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 7.0e-10 67.0 62 51.6
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 9.1e-10 66.6 71 46.5
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 9.1e-10 66.6 69 52.2
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-09 66.2 100 40.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.5e-09 64.7 71 49.3
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 5.9e-09 63.9 69 47.8
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 7.7e-09 63.5 69 50.7
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.2e-08 62.0 71 43.7
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.2e-08 62.0 71 45.1
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 8.5e-08 60.1 71 45.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 8.5e-08 60.1 71 43.7
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.5e-08 60.1 71 43.7
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.1e-07 59.7 50 58.0
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.5e-07 59.3 68 48.5
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 3.2e-07 58.2 70 44.3
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 9.4e-07 56.6 71 42.3
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 1.6e-06 55.8 69 43.5
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 6.1e-06 53.9 51 52.9


User provided reference genes

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