Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2743.0 1384 100.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2531.1 1384 90.0
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1384 89.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2522.3 1384 89.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2518.8 1384 90.1
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1384 89.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2516.1 1384 89.9
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1384 89.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2511.5 1384 89.7
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1385 89.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2509.2 1384 89.7
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2506.1 1385 89.2
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1385 90.3
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1385 89.2
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1385 89.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1384 89.3
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2501.1 1385 90.1
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1384 89.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1398 88.8
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2496.1 1384 89.3
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2495.7 1384 89.2
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2494.5 1383 89.3
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1384 89.1
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1384 89.0
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1388 88.7
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1384 88.8
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1384 88.7
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1385 88.5
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 88.4
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1388 88.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1385 88.5
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1385 88.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1384 88.4
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1382 88.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2478.4 1385 88.2
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2478.4 1384 88.3
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1386 88.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1385 88.2
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1385 88.4
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1384 88.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1385 88.2
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.9
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.4
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1385 88.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1384 88.8
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1385 88.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1387 88.2
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2470.7 1384 88.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2470.3 1400 87.8
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2469.9 1385 88.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1384 88.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2466.4 1384 87.9
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2466.4 1384 87.9
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2466.4 1385 87.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1385 87.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2463.7 1384 87.8
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1387 87.9
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1385 88.1
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1384 88.0
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1387 88.0
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2461.8 1384 88.0
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2461.4 1385 88.2
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2460.6 1395 87.7
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2460.6 1385 87.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2456.4 1411 86.5
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2454.9 1384 87.9
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2452.6 1384 87.2
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1446 84.5
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2449.1 1384 87.6
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2447.5 1384 87.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2445.6 1385 87.3
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2444.8 1385 87.4
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2439.5 1384 87.7
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2438.3 1385 87.3
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2428.3 1335 90.0
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1355 88.4
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1385 87.1
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2408.3 1384 86.7
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1385 86.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1385 85.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2398.6 1385 85.6
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2397.9 1385 85.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2395.9 1384 85.6
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1385 85.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2394.4 1385 85.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1385 86.4
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2387.1 1386 85.4
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2387.1 1386 85.4
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2386.3 1385 85.3
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2384.4 1385 85.2
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2384.4 1385 85.2
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2379.7 1384 85.8
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2364.7 1386 85.1
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2343.5 1386 84.3
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2323.1 1400 82.3
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2322.0 1384 84.1
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2318.1 1350 83.7
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2301.6 1410 82.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2268.0 1260 88.7
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2254.9 1259 88.8
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2209.5 1351 79.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2201.8 1263 86.9
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2200.2 1347 82.4
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2195.6 1334 80.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2186.8 1333 80.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2183.3 1344 79.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2183.3 1344 79.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2157.1 1370 76.9
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1971.1 1122 87.0
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1961.0 1382 73.9
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1947.2 1110 87.0
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1907.1 1402 72.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1904.8 1332 70.1
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1861.3 1348 67.8
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1700.6 1384 66.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1683.7 913 90.7
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1634.4 898 90.2
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1508.4 809 91.3
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1504.2 808 91.3
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1154.4 690 83.6
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1119.4 675 82.1
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.2e-306 1056.2 669 79.7
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.8e-298 1029.2 571 87.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.6e-267 926.4 1202 44.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 9.8e-259 897.9 588 77.2
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 5.4e-241 839.0 472 87.7
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.9e-239 832.8 472 87.1
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 5.6e-238 828.9 473 87.3
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 3.9e-215 753.1 473 80.3
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.8e-207 727.6 398 88.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 3.9e-175 620.2 1386 31.7
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-160 571.6 1450 30.6
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.7e-107 394.8 822 32.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.3e-88 332.8 175 92.6
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 7.4e-65 253.8 147 81.6
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.6e-59 235.0 123 91.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.7e-45 189.5 107 87.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.6e-41 175.6 175 57.7
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.2e-31 142.1 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.8e-27 129.0 99 67.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 8.0e-27 127.5 91 70.3
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.1e-20 107.1 61 86.9


User provided reference genes

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