Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.5e-121 438.7 216 100.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.2e-100 368.2 226 80.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.2e-100 368.2 226 80.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.3e-93 346.7 226 73.5
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.1e-92 343.6 226 72.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.2e-92 340.9 222 76.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 3.0e-90 335.5 226 73.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.0e-90 335.1 226 72.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.6e-89 332.4 226 69.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.7e-89 331.3 226 71.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 7.5e-89 330.9 225 72.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 5.4e-87 324.7 227 70.9
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 7.0e-87 324.3 219 73.5
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.5e-86 322.0 229 69.4
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.9e-86 321.2 223 73.1
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 5.9e-86 321.2 216 74.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.0e-85 320.5 226 69.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.0e-85 320.5 226 68.6
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.0e-85 318.2 226 69.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 6.5e-85 317.8 226 68.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.1e-84 317.0 224 70.1
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 5.5e-84 314.7 229 68.6
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.2e-84 314.3 228 66.7
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.2e-84 314.3 228 66.7
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 7.2e-84 314.3 226 68.1
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.6e-83 313.2 229 66.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.0e-83 310.8 228 65.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.4e-82 310.1 229 69.0
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.0e-82 308.9 221 69.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.0e-82 308.9 221 70.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.0e-82 308.9 226 68.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.2e-82 308.1 221 67.9
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 6.8e-82 307.8 227 66.5
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.8e-82 307.8 227 66.5
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 6.8e-82 307.8 224 67.4
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-81 307.0 232 66.8
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-81 306.2 227 65.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.4e-81 305.4 227 66.1
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.4e-81 305.4 227 67.4
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.5e-81 304.3 226 65.9
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 9.8e-81 303.9 228 67.5
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-80 303.5 227 65.6
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.3e-80 303.5 223 67.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.4e-79 300.1 228 67.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-79 299.3 229 66.8
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.1e-79 298.9 236 64.8
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 9.2e-79 297.4 227 63.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.7e-78 295.8 231 65.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 3.5e-78 295.4 230 65.7
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.5e-78 295.0 229 65.5
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.9e-78 294.7 223 65.9
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.9e-78 294.7 227 63.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.0e-77 293.9 220 65.9
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.3e-77 293.5 233 64.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.9e-77 292.4 227 67.0
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.5e-76 290.0 220 70.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.9e-76 289.7 219 66.7
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 5.6e-76 288.1 229 65.5
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 9.5e-76 287.3 230 64.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.1e-75 286.2 223 66.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.0e-74 283.9 219 64.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.8e-74 283.1 218 64.7
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 6.8e-74 281.2 218 66.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 8.9e-74 280.8 217 65.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-73 280.4 243 59.7
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.5e-73 280.0 218 66.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.0e-73 279.6 217 64.5
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-73 279.3 224 62.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.4e-73 278.9 228 62.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.4e-73 278.9 166 77.1
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 9.8e-73 277.3 224 62.5
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 9.8e-73 277.3 220 65.5
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 9.8e-73 277.3 226 61.5
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.3e-72 276.9 222 63.5
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.3e-72 276.9 217 65.4
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.7e-72 276.6 225 65.3
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.2e-72 276.2 230 61.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-72 276.2 214 63.6
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.2e-72 276.2 219 63.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.1e-71 273.9 229 61.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.4e-71 273.5 219 62.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.8e-71 273.1 220 63.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.8e-71 273.1 219 64.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 3.2e-71 272.3 224 62.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 9.2e-71 270.8 230 59.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-70 270.4 226 61.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.0e-70 269.6 218 63.3
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-70 269.6 226 61.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 7.8e-70 267.7 216 64.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.8e-70 267.7 218 63.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-69 266.9 213 62.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-69 266.9 214 62.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.7e-69 266.5 214 62.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.0e-69 265.8 218 61.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.0e-69 265.0 211 64.0
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.0e-69 265.0 214 62.1
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.1e-68 263.8 230 60.9
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.5e-68 263.5 226 59.7
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.6e-67 260.0 211 60.2
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.8e-67 259.2 212 60.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 4.7e-67 258.5 212 62.7
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 4.7e-67 258.5 212 62.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-66 257.3 215 61.9
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-66 257.3 217 59.9
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.3e-66 256.1 219 60.7
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-66 255.8 216 58.3
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.1e-66 255.8 216 58.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 5.2e-66 255.0 216 57.9
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 7.5e-65 251.1 212 60.8
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 9.8e-65 250.8 249 57.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.3e-64 250.4 218 62.4
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.9e-64 249.2 209 58.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 6.4e-64 248.1 218 61.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 6.4e-64 248.1 207 61.8
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 8.3e-64 247.7 217 59.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-63 246.5 216 58.3
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.4e-63 246.1 217 60.4
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.4e-63 246.1 212 61.3
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.2e-63 245.7 230 54.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.1e-63 245.4 152 76.3
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 3.5e-62 242.3 220 58.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.8e-62 241.1 209 56.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-61 240.0 218 60.6
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-61 239.2 189 63.5
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 6.6e-61 238.0 227 55.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.6e-61 237.7 213 55.4
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-60 237.3 217 57.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-60 237.3 211 56.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-59 233.4 238 52.9
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.6e-59 233.4 227 54.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-59 232.3 201 56.7
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 8.1e-59 231.1 203 55.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.4e-58 230.3 194 60.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.0e-58 228.8 213 52.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.8e-58 228.0 211 56.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 6.8e-58 228.0 213 52.6
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-57 226.9 186 60.2
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.4e-57 225.7 140 75.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.5e-57 224.6 213 51.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 9.8e-57 224.2 219 51.6
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-56 223.8 215 51.2
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.3e-56 223.8 207 58.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.7e-56 223.4 213 50.7
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.7e-56 223.4 175 61.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.7e-56 223.4 216 55.6
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-56 223.4 211 51.2
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 9.2e-55 217.6 159 63.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.6e-54 215.3 229 52.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.9e-53 212.2 228 53.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.1e-51 204.5 202 50.0
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 8.9e-50 201.1 130 69.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.2e-49 200.7 204 49.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.0e-49 199.9 154 66.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.6e-49 198.0 183 59.0
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 9.9e-49 197.6 220 49.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.4e-48 194.9 221 53.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-47 193.0 215 48.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.4e-47 191.8 216 47.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 7.1e-47 191.4 155 57.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.6e-46 190.3 272 44.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.6e-46 190.3 168 53.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-46 189.9 216 46.8
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.5e-44 183.7 170 53.5
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.5e-44 183.0 221 51.6
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 9.6e-44 181.0 181 51.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.2e-43 180.6 123 68.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.6e-38 163.7 106 67.9
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.7e-38 162.9 207 49.3
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.7e-38 162.9 173 48.0
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.7e-38 162.9 136 60.3
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 7.3e-36 154.8 223 46.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 7.3e-36 154.8 223 46.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.8e-35 152.9 217 44.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 8.1e-35 151.4 82 85.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.6e-27 125.9 88 64.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.1e-22 110.2 84 63.1
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.1e-19 100.1 115 50.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.9e-18 95.1 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.5e-16 88.6 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 1.7e-08 63.9 129 35.7


User provided reference genes

Program Settings