Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 0.0e+00 1265.0 665 100.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.8e-243 845.5 648 66.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.1e-242 843.6 649 68.7
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.9e-236 822.8 613 69.8
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 9.3e-231 803.9 649 64.4
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 6.0e-230 801.2 654 64.8
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.8e-227 792.3 653 64.0
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.8e-225 784.6 653 63.6
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.3e-224 783.5 647 62.9
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.7e-224 783.1 657 63.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.1e-223 780.4 646 62.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.9e-223 779.6 658 62.9
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.3e-221 772.7 652 61.0
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 3.0e-221 772.3 663 60.0
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.7e-219 765.4 658 60.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.1e-219 764.2 657 59.7
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.4e-217 758.8 638 62.2
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.5e-217 758.4 657 59.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.5e-217 758.4 695 58.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.2e-216 756.1 673 60.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 4.9e-216 755.0 668 59.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 6.4e-216 754.6 655 61.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-215 753.8 638 60.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.2e-215 752.3 652 60.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.2e-215 752.3 662 59.1
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.2e-215 751.9 654 59.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 4.2e-215 751.9 658 59.7
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.5e-215 751.5 658 60.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 5.5e-215 751.5 695 57.8
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.5e-214 748.8 662 59.1
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 6.0e-214 748.0 639 60.4
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 2.3e-213 746.1 651 60.5
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.5e-212 743.4 638 60.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.5e-212 743.4 642 60.0
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-212 743.0 629 60.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 3.3e-212 742.3 638 60.3
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.3e-212 742.3 650 60.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.3e-212 741.9 647 59.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 9.6e-212 740.7 647 60.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.7e-211 738.8 647 59.5
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.8e-211 738.4 653 60.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 8.2e-211 737.6 642 60.6
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.3e-210 734.9 543 68.0
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 9.0e-210 734.2 647 58.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.4e-209 732.3 646 59.1
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.8e-209 731.5 629 60.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.7e-208 729.9 650 59.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.2e-208 729.6 647 59.7
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.4e-207 726.9 665 57.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 3.2e-207 725.7 647 59.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.5e-207 724.9 662 57.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 7.1e-207 724.5 647 59.2
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 7.1e-207 724.5 653 59.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 9.3e-207 724.2 645 59.1
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.6e-206 723.4 655 58.0
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.9e-206 721.1 649 58.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.3e-205 720.3 653 58.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.0e-205 719.2 657 58.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.3e-204 715.7 654 57.3
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-202 710.3 668 56.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.1e-202 709.1 648 57.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.3e-202 708.4 666 57.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 6.9e-202 708.0 661 57.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 9.0e-202 707.6 659 56.4
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.4e-201 705.7 667 57.1
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.8e-200 702.2 654 57.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 6.5e-200 701.4 647 58.4
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-199 699.9 647 58.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 3.2e-199 699.1 661 55.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 4.2e-199 698.7 640 56.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.0e-197 694.1 640 56.6
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.4e-197 693.7 684 55.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.8e-197 693.3 638 56.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.0e-197 692.6 654 56.7
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.0e-197 692.6 667 55.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.9e-197 692.2 647 55.8
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.7e-197 691.4 640 56.6
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-196 690.3 639 56.0
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.5e-196 689.5 647 56.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.7e-195 686.8 635 58.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.2e-195 686.4 643 55.5
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.8e-195 686.0 640 55.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.8e-195 686.0 640 55.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-194 683.3 581 60.2
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-194 682.9 634 56.3
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.5e-193 680.2 641 56.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.0e-193 679.9 640 55.6
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.9e-193 678.3 661 54.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-192 676.8 636 55.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 6.5e-192 674.9 620 57.3
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.2e-191 672.5 703 52.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.2e-191 672.2 665 54.6
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 4.7e-190 668.7 635 56.9
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 6.1e-190 668.3 650 55.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.1e-188 664.1 565 62.5
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.5e-188 663.7 648 56.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.5e-188 663.7 535 63.6
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.7e-188 661.0 651 54.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-187 660.2 648 55.7
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.2e-183 645.6 661 51.1
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-181 640.2 583 60.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 7.4e-180 634.8 626 56.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.8e-176 622.5 648 52.3
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 9.4e-175 617.8 646 50.0
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 9.7e-172 607.8 658 50.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-170 602.4 537 57.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 8.5e-168 594.7 564 57.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.0e-165 587.8 651 51.8
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.3e-159 566.2 525 55.6
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 8.0e-158 561.6 506 56.9
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.7e-155 553.9 656 45.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.9e-151 540.4 400 69.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.5e-151 538.1 652 46.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.6e-148 530.0 627 47.4
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.4e-148 529.3 652 44.6
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 7.8e-145 518.5 648 43.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 4.3e-143 512.7 649 45.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.6e-126 457.6 398 62.8
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.4e-125 453.8 427 55.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-119 434.5 396 58.1
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.7e-76 289.3 234 62.8
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-75 288.5 358 45.5
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.0e-71 274.6 205 75.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 2.6e-71 274.2 432 38.9
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 5.7e-71 273.1 426 40.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 2.0e-68 264.6 251 56.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.0e-68 264.6 234 57.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 6.5e-59 233.0 389 37.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.4e-53 213.4 201 62.2
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 9.1e-53 212.6 362 39.5
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.0e-48 197.2 259 45.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-45 186.8 201 52.7
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.7e-44 184.5 306 38.2
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 7.7e-44 183.0 170 52.4
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-39 166.4 139 61.2
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 5.9e-36 156.8 255 39.2
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-34 152.5 236 41.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.1e-33 148.3 615 25.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.4e-31 140.6 244 37.3
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.8e-31 140.2 187 44.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 6.2e-25 120.2 96 62.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-24 118.6 120 60.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 4.9e-22 110.5 107 48.6
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.9e-22 110.5 101 52.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-20 105.1 132 47.7
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-19 102.1 132 46.2
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.6e-19 100.1 134 45.5
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.1e-17 93.2 143 42.7
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 8.1e-17 93.2 88 54.5
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-16 92.0 80 57.5
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.2e-15 89.4 75 62.7
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-15 88.6 66 65.2
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-15 87.8 68 61.8
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.3e-10 70.9 46 76.1
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 9.6e-10 69.7 61 47.5
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.0e-08 64.3 73 46.6
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.0e-07 62.0 97 43.3
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-07 61.6 59 49.2
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-06 59.3 52 53.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.3e-06 59.3 360 23.9
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 2.2e-06 58.5 62 46.8


User provided reference genes

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