Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.1e-45 184.9 100 100.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.1e-45 184.9 100 100.0
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.5e-20 101.3 93 66.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.7e-17 92.0 83 62.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.7e-17 92.0 82 61.0
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.6e-17 91.3 80 62.5
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-16 90.1 80 61.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-16 89.4 74 66.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.3e-16 89.0 90 56.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 3.0e-16 88.6 82 62.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.0e-16 88.6 86 59.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.0e-16 88.6 80 61.2
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.1e-16 87.8 91 53.8
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.1e-16 87.8 74 64.9
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.7e-16 87.4 93 53.8
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.7e-16 87.0 85 61.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-15 86.7 96 54.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-15 86.7 87 60.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.1e-15 86.7 92 56.5
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.5e-15 86.3 75 64.0
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.5e-15 85.5 73 64.4
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.3e-15 85.1 78 59.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 4.3e-15 84.7 72 66.7
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.3e-15 84.7 83 60.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.6e-15 84.3 82 57.3
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 5.6e-15 84.3 75 65.3
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 7.4e-15 84.0 74 64.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 9.6e-15 83.6 75 62.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.3e-14 83.2 79 59.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.3e-14 83.2 87 56.3
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.6e-14 82.8 82 56.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.6e-14 82.8 75 64.0
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.1e-14 82.4 73 63.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.1e-14 82.4 77 57.1
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.1e-14 82.4 80 60.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.1e-14 82.4 94 56.4
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.8e-14 82.0 76 61.8
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.8e-14 82.0 76 60.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.8e-14 82.0 72 65.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.8e-14 82.0 77 57.1
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.7e-14 81.6 74 62.2
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.7e-14 81.6 71 62.0
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.7e-14 81.6 65 67.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.7e-14 81.6 65 67.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 4.8e-14 81.3 75 61.3
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.8e-14 81.3 72 62.5
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.8e-14 81.3 85 54.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.8e-14 81.3 73 64.4
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 6.2e-14 80.9 80 60.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.2e-14 80.9 76 67.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.2e-14 80.9 76 64.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.2e-14 80.9 73 60.3
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 8.1e-14 80.5 74 60.8
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 8.1e-14 80.5 75 64.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.4e-13 79.7 75 56.0
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.8e-13 79.3 78 60.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 2.4e-13 79.0 83 56.6
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-13 78.6 65 72.3
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.1e-13 78.6 83 56.6
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.1e-13 78.6 79 55.7
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.0e-13 78.2 75 57.3
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.0e-13 78.2 76 57.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 4.0e-13 78.2 82 56.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.0e-13 78.2 73 60.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 5.3e-13 77.8 76 61.8
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 5.3e-13 77.8 66 63.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 5.3e-13 77.8 82 56.1
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 5.3e-13 77.8 82 54.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 9.0e-13 77.0 73 60.3
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 9.0e-13 77.0 73 60.3
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 9.0e-13 77.0 73 60.3
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 9.0e-13 77.0 72 58.3
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 9.0e-13 77.0 68 63.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 9.0e-13 77.0 91 53.8
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.0e-12 75.9 73 60.3
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.0e-12 75.9 73 60.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.0e-12 75.9 94 52.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.0e-12 75.9 85 51.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.6e-12 75.5 62 66.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.6e-12 75.5 88 50.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.6e-12 75.5 93 52.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.6e-12 75.5 73 56.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.6e-12 75.5 82 56.1
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.8e-12 74.3 73 54.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.8e-12 74.3 64 65.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 5.8e-12 74.3 73 58.9
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.6e-12 73.9 70 60.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-11 73.6 72 59.7
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.0e-11 73.6 84 51.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.3e-11 73.2 73 57.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.7e-11 72.8 81 50.6
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.7e-11 72.8 75 58.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.2e-11 72.4 72 54.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 2.2e-11 72.4 76 60.5
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.2e-11 72.4 91 49.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.9e-11 72.0 76 53.9
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 3.8e-11 71.6 73 53.4
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.5e-11 70.9 73 53.4
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 6.5e-11 70.9 75 57.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 8.4e-11 70.5 62 61.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.4e-11 70.5 76 57.9
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 8.4e-11 70.5 82 51.2
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 8.4e-11 70.5 88 47.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-10 70.1 73 54.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.1e-10 70.1 64 57.8
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-10 70.1 76 57.9
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-10 70.1 76 57.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.4e-10 69.7 69 55.1
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.4e-10 69.7 81 53.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-10 69.7 81 50.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.5e-10 68.9 73 53.4
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.5e-10 68.9 81 49.4
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.5e-10 68.9 81 49.4
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.2e-10 68.6 62 59.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 4.2e-10 68.2 68 58.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.2e-10 68.2 76 53.9
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 4.2e-10 68.2 70 65.7
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.5e-10 67.8 79 49.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 7.1e-10 67.4 69 56.5
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 9.3e-10 67.0 70 58.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 9.3e-10 67.0 73 52.1
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.2e-09 66.6 70 51.4
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.2e-09 66.6 83 49.4
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.6e-09 66.2 65 61.5
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.6e-09 66.2 77 51.9
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 2.1e-09 65.9 70 65.7
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 2.1e-09 65.9 70 65.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.7e-09 65.5 92 46.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.6e-09 64.7 62 62.9
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 4.6e-09 64.7 65 56.9
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.0e-09 64.3 83 50.6
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.0e-08 63.5 74 56.8
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-08 63.2 62 59.7
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-08 63.2 90 46.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 84 48.8
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 75 53.3
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-08 62.8 66 54.5
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.9e-08 61.6 84 45.2
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.1e-08 61.2 72 52.8
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.1e-08 61.2 69 49.3
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 6.7e-08 60.8 80 47.5
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 8.7e-08 60.5 60 56.7
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 2.5e-07 58.9 60 60.0
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.7e-07 57.8 66 50.0
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.7e-07 57.8 66 48.5
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.4e-07 57.4 67 53.7
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.6e-07 57.0 67 53.7
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.3e-06 56.6 82 47.6
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.2e-06 53.9 90 45.6
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.2e-06 53.9 82 42.7


User provided reference genes

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