Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.8e-98 361.7 207 100.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-87 326.2 213 91.1
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.3e-45 187.2 211 55.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 8.6e-26 121.3 258 39.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.1e-25 120.9 250 39.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.1e-24 116.7 257 38.1
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.7e-24 115.5 263 38.0
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 6.2e-24 115.2 254 37.4
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 8.1e-24 114.8 250 37.6
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.1e-23 114.4 262 37.0
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.4e-23 114.0 251 39.0
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.8e-23 113.6 225 40.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 2.3e-23 113.2 240 36.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 2.3e-23 113.2 261 38.7
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 5.2e-23 112.1 244 38.5
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-22 110.5 259 37.1
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.0e-22 110.2 262 35.9
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.0e-22 110.2 261 36.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.0e-22 110.2 169 44.4
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.6e-22 109.8 169 44.4
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.6e-22 109.8 158 47.5
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 2.6e-22 109.8 273 35.5
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.8e-22 108.6 256 36.7
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.3e-21 107.5 266 37.6
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.2e-21 106.7 266 37.6
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.2e-21 106.7 279 34.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.2e-21 106.7 256 35.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.2e-21 106.7 258 34.9
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.9e-21 106.3 172 43.6
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.9e-21 106.3 148 45.3
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.9e-21 106.3 262 37.0
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.9e-21 106.3 265 37.0
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.9e-21 105.5 253 37.2
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.9e-21 105.5 258 37.6
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 6.4e-21 105.1 256 35.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 6.4e-21 105.1 254 37.4
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.4e-21 105.1 177 41.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 6.4e-21 105.1 254 36.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 6.4e-21 105.1 225 38.7
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.3e-21 104.8 262 34.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.1e-20 104.4 153 43.8
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-20 104.4 238 38.7
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-20 104.0 242 36.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-20 104.0 242 36.8
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.9e-20 103.6 254 33.9
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-20 103.6 148 44.6
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.9e-20 103.6 226 38.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.4e-20 103.2 262 35.1
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.4e-20 103.2 255 36.9
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.4e-20 103.2 250 34.8
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.4e-20 103.2 213 36.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 3.2e-20 102.8 250 35.2
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.2e-20 102.8 149 44.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.2e-20 102.8 256 34.4
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 4.1e-20 102.4 150 44.7
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-20 102.4 153 45.8
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-20 102.4 153 45.8
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 4.1e-20 102.4 187 40.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 4.1e-20 102.4 256 34.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.4e-20 102.1 151 43.7
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.4e-20 102.1 235 38.3
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.1e-20 101.7 239 36.4
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.1e-20 101.7 239 36.4
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 7.1e-20 101.7 256 34.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-19 100.9 233 38.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.2e-19 100.9 233 38.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.2e-19 100.9 242 36.0
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.2e-19 100.9 249 33.7
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.6e-19 100.5 151 43.0
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.1e-19 100.1 266 35.3
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.7e-19 99.8 252 34.5
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.7e-19 99.8 281 35.9
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.7e-19 99.8 251 35.9
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.7e-19 99.8 235 37.9
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.7e-19 99.8 249 32.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.5e-19 99.4 158 43.0
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.5e-19 99.4 175 42.9
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 3.5e-19 99.4 241 35.3
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 3.5e-19 99.4 260 33.8
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-19 99.0 166 42.8
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.6e-19 99.0 133 47.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 4.6e-19 99.0 262 35.9
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.0e-19 98.6 169 43.2
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.0e-19 98.6 262 33.2
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.0e-19 98.6 259 37.1
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 6.0e-19 98.6 259 35.5
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 6.0e-19 98.6 176 43.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 7.8e-19 98.2 253 33.6
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 7.8e-19 98.2 267 36.0
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 7.8e-19 98.2 250 36.0
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 7.8e-19 98.2 240 36.2
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-18 97.8 257 34.2
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-18 97.8 229 35.4
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.0e-18 97.8 229 35.4
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-18 97.4 148 43.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.3e-18 97.4 259 35.5
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-18 97.4 280 35.7
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.7e-18 97.1 133 46.6
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.3e-18 96.7 228 35.5
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 2.3e-18 96.7 228 37.3
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.0e-18 96.3 261 33.0
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 3.0e-18 96.3 236 34.7
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.0e-18 96.3 243 34.2
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 3.9e-18 95.9 246 36.6
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 5.1e-18 95.5 184 39.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.6e-18 95.1 252 32.1
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-17 94.4 148 45.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-17 94.4 250 34.4
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-17 94.4 223 36.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-17 94.4 258 35.3
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.5e-17 94.0 260 35.4
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.5e-17 94.0 239 33.9
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.5e-17 94.0 193 37.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.9e-17 93.6 264 34.5
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.9e-17 93.6 260 33.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 1.9e-17 93.6 242 36.0
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.5e-17 93.2 251 33.1
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.5e-17 93.2 237 34.2
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.5e-17 93.2 230 37.0
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.5e-17 93.2 186 37.1
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.3e-17 92.8 267 33.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 4.3e-17 92.4 153 44.4
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 4.3e-17 92.4 179 40.8
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 4.3e-17 92.4 215 35.8
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.3e-17 92.4 249 35.7
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 5.6e-17 92.0 256 34.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 5.6e-17 92.0 158 43.7
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.3e-17 91.7 247 33.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 9.5e-17 91.3 228 36.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 9.5e-17 91.3 239 33.9
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 9.5e-17 91.3 249 35.7
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.2e-16 90.9 161 41.6
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-16 90.9 142 44.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.6e-16 90.5 254 31.9
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 2.1e-16 90.1 147 42.2
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.1e-16 90.1 218 38.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.8e-16 89.7 134 45.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.6e-16 89.4 253 32.8
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 3.6e-16 89.4 241 35.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.6e-16 89.4 238 33.6
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 3.6e-16 89.4 291 34.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 6.2e-16 88.6 245 36.7
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 8.1e-16 88.2 218 33.9
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.4e-15 87.4 229 32.3
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.1e-15 86.3 165 38.8
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 6.8e-15 85.1 134 43.3
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 6.8e-15 85.1 142 42.3
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 8.9e-15 84.7 255 32.5
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.9e-15 84.7 237 32.9
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.2e-14 84.3 186 39.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.5e-14 84.0 303 30.4
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.4e-14 82.4 263 31.9
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.3e-13 80.9 152 40.1
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.8e-13 79.3 262 30.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.2e-12 75.9 162 35.8
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.8e-11 71.6 246 30.9
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.8e-11 71.6 246 30.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.3e-10 70.9 263 30.8
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.3e-10 70.1 232 33.2
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.9e-09 67.0 217 31.8
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.3e-09 65.9 48 70.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.6e-08 63.9 135 34.1
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-08 63.5 172 31.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.8e-08 63.2 188 33.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 4.7e-08 62.4 50 66.0
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 4.7e-08 62.4 53 58.5
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.1e-07 61.2 111 42.3
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 2.0e-06 57.0 52 53.8
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 5.8e-06 55.5 125 40.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 9.9e-06 54.7 135 32.6


User provided reference genes

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