Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.8e-110 402.5 197 100.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 4.3e-51 205.3 204 56.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 3.7e-50 202.2 207 57.0
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.1e-44 181.8 198 52.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.1e-42 176.4 184 52.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.8e-42 176.0 211 50.7
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.1e-41 174.1 206 50.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-41 173.3 206 48.1
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.5e-40 168.7 217 48.4
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.7e-39 166.8 204 45.1
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-39 166.8 204 47.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 6.5e-39 164.9 176 52.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 8.4e-39 164.5 211 47.4
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.4e-39 164.5 204 46.6
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 4.2e-38 162.2 201 46.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 5.5e-38 161.8 205 45.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.1e-38 161.4 196 47.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-38 161.4 189 47.6
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.1e-38 161.4 189 47.6
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.1e-38 161.4 200 45.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 9.3e-38 161.0 204 45.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.2e-37 160.6 198 46.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.6e-37 160.2 193 48.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.6e-37 160.2 198 47.0
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.7e-37 159.5 212 47.2
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-37 159.5 188 47.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.1e-37 158.3 189 47.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.9e-37 157.9 212 44.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 7.9e-37 157.9 206 46.6
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.7e-36 154.8 182 46.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-35 154.1 204 46.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.5e-35 152.9 189 45.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 9.7e-35 151.0 211 46.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-34 150.6 189 44.4
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.3e-34 150.6 215 44.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.6e-34 150.2 197 45.2
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.2e-34 149.8 180 47.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 4.8e-34 148.7 212 42.9
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 6.3e-34 148.3 201 44.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.3e-34 148.3 217 45.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.2e-34 147.9 215 44.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.2e-34 147.9 215 44.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.2e-34 147.9 215 44.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-33 147.1 215 43.7
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-33 147.1 207 45.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-33 146.0 215 43.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.1e-33 146.0 207 45.9
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.1e-33 145.6 207 42.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.3e-33 145.2 207 44.9
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 9.0e-33 144.4 201 41.8
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.2e-32 144.1 213 43.2
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.2e-32 144.1 190 43.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.0e-32 143.3 238 42.0
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.0e-32 143.3 223 41.3
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-32 142.9 157 51.0
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.9e-32 141.7 196 44.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 7.7e-32 141.4 192 44.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-31 140.6 204 44.1
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-31 140.2 209 42.1
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.7e-31 140.2 187 46.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 5.0e-31 138.7 121 57.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 5.0e-31 138.7 179 45.3
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 8.5e-31 137.9 211 42.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 8.5e-31 137.9 180 43.3
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-30 137.5 176 46.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.2e-30 136.0 182 46.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.2e-30 135.6 183 45.9
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 7.2e-30 134.8 187 47.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.2e-29 134.0 201 41.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-29 134.0 203 42.9
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.2e-29 134.0 182 42.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.7e-29 132.9 211 42.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 4.6e-29 132.1 182 42.9
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 6.1e-29 131.7 136 51.5
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.4e-28 130.6 180 45.6
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-28 130.6 211 41.2
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-28 130.2 186 41.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.8e-28 130.2 180 44.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.9e-28 129.0 185 44.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.1e-28 128.6 179 45.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.1e-28 128.6 196 42.9
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 5.1e-28 128.6 180 42.8
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.8e-28 127.9 196 41.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.8e-28 127.9 203 38.4
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-27 127.5 208 40.4
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.1e-27 127.5 184 43.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-27 127.1 202 39.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-27 126.7 208 40.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.3e-27 125.6 202 39.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 7.4e-27 124.8 137 49.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.8e-26 122.1 201 40.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 4.8e-26 122.1 218 35.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.2e-26 121.3 112 55.4
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.2e-26 121.3 196 41.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-25 120.6 187 41.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.1e-25 119.4 224 37.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.1e-25 119.0 221 37.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.3e-25 118.6 146 49.3
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-25 118.6 188 39.4
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.9e-25 118.2 186 38.7
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 6.9e-25 118.2 187 39.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.9e-25 118.2 189 38.6
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-24 117.5 199 36.7
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.5e-24 117.1 231 37.2
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.5e-24 117.1 198 37.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-24 117.1 202 40.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-24 117.1 202 40.6
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-24 116.3 184 38.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-24 116.3 187 39.0
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.4e-24 115.9 189 38.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.4e-24 115.9 155 45.2
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.5e-24 115.5 184 38.6
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.5e-24 115.5 160 46.9
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.5e-24 115.5 217 36.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 7.7e-24 114.8 184 38.6
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-23 113.6 184 38.0
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.2e-23 113.2 190 37.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.8e-23 112.5 189 39.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.0e-23 112.1 187 36.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.5e-23 111.3 184 36.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 8.5e-23 111.3 227 35.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-22 110.9 184 38.6
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.4e-22 110.5 184 35.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.4e-22 110.5 188 37.8
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.5e-22 109.8 125 50.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.2e-22 109.4 206 34.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.2e-22 109.0 187 36.9
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.2e-22 109.0 223 35.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.2e-22 108.2 181 38.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 9.4e-22 107.8 191 39.3
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-21 107.5 177 37.9
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-21 106.7 187 35.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.1e-21 106.7 222 36.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 6.1e-21 105.1 194 39.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.4e-20 104.0 184 34.8
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-20 104.0 186 36.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.4e-20 104.0 197 33.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-20 103.6 192 34.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-20 103.6 186 35.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-20 103.6 185 35.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.8e-20 103.6 193 36.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.3e-20 103.2 199 34.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 3.9e-20 102.4 184 35.3
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 5.1e-20 102.1 176 36.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.1e-20 102.1 186 34.9
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.1e-20 102.1 163 38.7
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 8.8e-20 101.3 171 39.8
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-19 100.9 193 33.7
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-19 100.1 181 34.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.6e-19 99.8 164 35.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.7e-19 98.6 164 36.0
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 9.7e-19 97.8 191 38.2
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.7e-18 97.1 183 37.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.8e-18 96.3 191 35.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 4.8e-18 95.5 191 34.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.2e-18 94.7 195 32.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.2e-18 94.7 195 32.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.2e-18 94.7 194 38.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-17 94.4 196 32.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.8e-17 93.6 185 37.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.1e-17 92.8 117 48.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 9.1e-17 91.3 178 34.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 2.0e-16 90.1 202 35.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.5e-16 89.4 196 34.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.9e-16 88.6 134 41.8
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.8e-15 85.9 129 41.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.0e-15 85.5 58 77.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.5e-14 83.2 186 35.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.5e-14 82.0 121 39.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-13 80.1 151 35.8
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.6e-13 79.3 191 32.5
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 4.7e-13 79.0 163 36.8
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 6.1e-13 78.6 121 41.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.0e-12 77.8 183 37.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-12 77.4 183 33.3
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-12 76.3 183 35.5
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 3.0e-12 76.3 183 35.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.7e-12 75.1 187 33.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-12 75.1 183 35.0
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 8.8e-12 74.7 183 36.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.6e-11 73.2 194 30.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.7e-10 69.3 200 31.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.0e-07 61.2 58 56.9


User provided reference genes

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