Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.3e-250 869.4 481 100.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.8e-120 435.6 484 50.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.5e-116 423.3 490 53.9
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 8.8e-114 414.8 489 49.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.6e-110 403.3 497 47.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 7.7e-110 401.7 497 47.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.3e-109 401.0 485 49.5
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.5e-108 396.7 490 47.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.7e-107 393.3 498 47.0
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 6.1e-107 392.1 495 48.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 7.9e-107 391.7 481 47.6
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.1e-106 389.0 488 46.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-105 386.7 491 47.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.6e-105 386.7 486 47.5
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.6e-105 386.7 486 48.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.3e-105 386.3 487 47.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.3e-104 384.4 496 46.0
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.7e-104 384.0 486 47.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.2e-104 383.6 482 48.1
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.7e-104 382.9 485 47.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.7e-104 382.9 485 48.0
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 3.7e-104 382.9 486 47.7
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.8e-104 382.5 491 47.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 6.3e-104 382.1 491 48.3
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.3e-104 382.1 490 47.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 8.2e-104 381.7 479 46.3
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 8.2e-104 381.7 486 45.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.1e-103 381.3 491 46.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.1e-103 379.8 371 53.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.1e-103 379.4 483 49.7
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 5.3e-103 379.0 487 47.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 9.1e-103 378.3 485 46.4
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 9.1e-103 378.3 495 46.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.2e-102 377.9 483 48.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.2e-102 377.9 483 48.2
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-102 377.9 393 52.9
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.5e-102 375.9 486 45.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-101 374.0 501 45.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.9e-101 373.2 488 46.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.9e-101 373.2 485 47.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.9e-101 373.2 482 46.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.8e-101 372.9 489 47.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 8.5e-101 371.7 371 52.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 5.5e-100 369.0 486 46.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.2e-100 368.6 494 45.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-99 367.9 484 45.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.1e-99 367.1 486 46.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-99 367.1 484 45.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.8e-98 364.0 413 48.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.8e-98 364.0 485 44.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.3e-98 363.6 446 48.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.2e-98 362.5 487 45.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 5.2e-98 362.5 491 47.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.7e-98 362.1 486 46.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.5e-97 360.9 490 46.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-97 360.1 468 45.9
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.7e-97 359.0 489 45.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 5.7e-97 359.0 469 45.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 5.7e-97 359.0 492 46.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 7.4e-97 358.6 483 44.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.4e-97 358.6 485 44.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-96 357.8 389 50.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.7e-96 356.3 485 45.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.3e-95 352.4 392 51.0
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.6e-94 350.1 493 44.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 5.5e-92 342.4 491 43.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 9.4e-92 341.7 488 43.9
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.7e-91 339.3 491 45.2
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-90 337.8 483 43.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.8e-90 337.4 352 53.1
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-90 337.0 379 49.3
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.3e-90 337.0 491 42.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.2e-89 334.7 614 36.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.5e-89 334.3 387 49.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.5e-89 334.3 516 43.2
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.4e-89 333.2 381 47.8
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 3.4e-89 333.2 485 43.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.7e-89 332.4 391 48.8
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.5e-89 332.0 479 42.2
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 9.8e-89 331.6 468 42.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.8e-89 331.6 394 48.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.7e-88 330.9 494 43.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.2e-88 330.5 469 42.6
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.3e-88 328.9 489 43.1
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 8.3e-88 328.6 488 42.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.4e-87 327.8 477 42.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.8e-87 327.4 481 43.9
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.4e-87 327.0 488 43.2
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.4e-87 327.0 488 43.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.1e-87 326.6 482 43.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 7.0e-87 325.5 465 41.7
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 7.0e-87 325.5 468 41.9
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-86 324.7 481 43.7
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.2e-86 324.7 399 46.1
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.6e-86 324.3 380 46.3
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-86 324.3 383 46.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.6e-86 324.3 380 46.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.6e-86 324.3 485 42.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.5e-86 322.8 443 44.5
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.9e-86 322.4 379 47.8
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.0e-85 321.6 485 43.9
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-85 321.6 498 41.2
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.7e-85 320.9 487 41.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.9e-85 320.1 498 41.8
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.8e-85 319.7 491 42.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.5e-85 318.9 445 43.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.5e-84 317.8 481 43.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 7.2e-84 315.5 481 39.9
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-83 313.9 373 46.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.1e-83 312.4 491 41.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.4e-82 311.2 373 46.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.2e-82 309.3 383 47.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 5.2e-82 309.3 486 41.4
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.8e-82 308.9 481 41.6
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-81 308.1 480 42.9
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.4e-81 306.6 378 44.7
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-80 304.7 493 40.4
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-80 304.7 498 42.8
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.1e-79 300.1 375 44.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.2e-78 298.1 308 52.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 7.7e-78 295.4 477 39.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.0e-77 295.0 397 44.1
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.3e-77 294.7 392 44.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.8e-77 293.1 358 43.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-76 291.6 357 48.2
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 4.7e-75 286.2 279 56.3
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.3e-74 283.9 358 45.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.0e-74 283.1 374 41.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.2e-74 282.7 511 37.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.8e-74 282.3 385 43.6
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 9.8e-73 278.5 363 42.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.7e-70 270.4 305 48.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.9e-70 269.2 381 43.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.5e-68 261.9 291 51.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.6e-67 260.0 323 48.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.6e-65 253.8 391 43.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 7.5e-65 252.3 418 38.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.5e-65 252.3 370 42.4
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.9e-64 250.4 372 38.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.4e-63 247.3 308 43.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-63 246.1 380 41.3
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.4e-63 246.1 308 43.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-61 241.5 246 52.0
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-61 241.5 303 41.9
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.6e-60 236.1 368 40.2
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.6e-59 234.6 388 38.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.8e-59 233.8 386 40.7
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.8e-59 233.8 290 43.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-57 228.0 383 41.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-56 224.9 206 57.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-53 215.3 480 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.9e-52 211.1 317 39.4
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 8.1e-51 205.7 249 46.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.6e-49 200.7 142 64.8
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.2e-48 197.6 195 54.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.7e-48 196.8 272 41.5
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 9.2e-47 192.2 372 34.7
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 6.2e-43 179.5 251 43.0
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 3.1e-42 177.2 189 51.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.8e-41 172.9 362 33.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 7.6e-41 172.6 394 35.0
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.2e-40 171.0 347 34.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 7.8e-38 162.5 258 41.1
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.3e-36 156.8 137 54.7
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 5.3e-34 149.8 208 44.2
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.8e-32 143.7 231 36.8
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.0e-29 135.6 100 66.0
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.9e-23 114.8 191 38.7
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.4e-23 114.4 200 35.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.9e-20 104.8 95 54.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.8e-19 100.9 208 34.6
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.1e-18 97.4 70 65.7
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.9e-18 96.3 82 56.1
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.2e-15 87.4 85 52.9
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 4.3e-12 77.0 79 49.4
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 2.1e-11 74.7 143 33.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 8.2e-11 72.8 62 59.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 2.2e-08 64.7 51 58.8


User provided reference genes

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