Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy271s006 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 8.1e-52 206.8 107 100.0
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 3.1e-51 204.9 105 100.0
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 4.9e-49 197.6 105 93.3
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 2.4e-48 195.3 106 91.5
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 3.2e-48 194.9 105 93.3
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 3.2e-48 194.9 105 93.3
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 4.1e-48 194.5 105 92.4
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 7.1e-48 193.7 105 91.4
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 1.2e-47 193.0 105 92.4
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 1.6e-47 192.6 105 91.4
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 1.6e-47 192.6 105 91.4
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 1.6e-47 192.6 105 92.4
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 2.1e-47 192.2 105 90.5
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 2.1e-47 192.2 105 90.5
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 2.7e-47 191.8 104 93.3
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 2.7e-47 191.8 105 91.4
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 2.7e-47 191.8 105 90.5
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.7e-47 191.8 105 91.4
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 2.7e-47 191.8 105 90.5
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 3.5e-47 191.4 105 89.5
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 4.6e-47 191.0 105 92.4
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 4.6e-47 191.0 105 91.4
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 4.6e-47 191.0 105 90.5
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 6.0e-47 190.7 105 90.5
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 6.0e-47 190.7 104 92.3
Peaxi162Scf00420g00931 Petunia axillaris HOM05D004665 ORTHO05D006264 6.0e-47 190.7 105 90.5
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 7.8e-47 190.3 105 89.5
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 1.0e-46 189.9 105 88.6
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.3e-46 189.5 105 89.5
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 1.3e-46 189.5 105 88.6
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 1.3e-46 189.5 105 90.5
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 1.3e-46 189.5 105 90.5
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 1.3e-46 189.5 105 88.6
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 1.3e-46 189.5 105 89.5
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 89.5
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 89.5
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 89.5
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 88.6
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 89.5
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 88.6
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 88.6
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 1.7e-46 189.1 104 88.5
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 88.6
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.7e-46 189.1 105 88.6
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 88.6
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 88.6
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 89.5
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 88.6
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 88.6
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 2.3e-46 188.7 105 88.6
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 3.0e-46 188.3 105 88.6
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 3.9e-46 188.0 104 89.4
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 3.9e-46 188.0 104 89.4
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 3.9e-46 188.0 105 88.6
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 3.9e-46 188.0 104 89.4
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 5.1e-46 187.6 105 87.6
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 5.1e-46 187.6 105 87.6
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 5.1e-46 187.6 105 87.6
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 5.1e-46 187.6 105 87.6
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 5.1e-46 187.6 105 87.6
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 6.6e-46 187.2 105 88.6
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 6.6e-46 187.2 105 88.6
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 8.6e-46 186.8 105 88.6
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 8.6e-46 186.8 105 87.6
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 1.1e-45 186.4 105 89.5
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 1.1e-45 186.4 105 88.6
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 1.5e-45 186.0 105 89.5
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 1.5e-45 186.0 105 88.6
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 1.9e-45 185.7 105 88.6
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 3.3e-45 184.9 105 87.6
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 3.3e-45 184.9 105 87.6
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 3.3e-45 184.9 105 87.6
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 4.3e-45 184.5 105 87.6
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 5.6e-45 184.1 105 87.6
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 5.6e-45 184.1 105 87.6
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 5.6e-45 184.1 105 83.8
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 5.6e-45 184.1 105 84.8
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 7.3e-45 183.7 105 87.6
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 2.1e-44 182.2 105 87.6
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 2.1e-44 182.2 105 83.8
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 3.6e-44 181.4 105 84.8
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 4.7e-44 181.0 104 87.5
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 4.7e-44 181.0 104 87.5
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 1.8e-43 179.1 105 85.7
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 2.4e-43 178.7 105 84.8
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 2.4e-43 178.7 105 84.8
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 3.1e-43 178.3 104 86.5
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 4.0e-43 177.9 128 75.0
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 5.2e-43 177.6 105 85.7
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 1.2e-42 176.4 105 86.7
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 1.2e-42 176.4 105 83.8
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 1.2e-42 176.4 104 82.7
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 1.5e-42 176.0 105 80.0
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 4.4e-42 174.5 105 79.0
DCAR_014318 Daucus carota HOM05D004665 ORTHO05D006264 5.8e-42 174.1 105 78.1
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 7.6e-42 173.7 105 79.0
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 1.3e-41 172.9 104 80.8
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 1.7e-41 172.6 111 78.4
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 1.7e-41 172.6 104 80.8
SEGI_40793 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 2.2e-41 172.2 104 81.7
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 2.2e-41 172.2 105 82.9
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 6.4e-41 170.6 159 61.0
Lsat_1_v5_gn_8_141180 Lactuca sativa HOM05D004665 ORTHO05D006264 9.2e-40 166.8 108 79.6
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 1.0e-38 163.3 105 81.9
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 2.3e-38 162.2 105 81.0
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 1.9e-37 159.1 92 88.0
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 3.3e-37 158.3 87 93.1
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 3.3e-37 158.3 105 75.2
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 3.1e-35 151.8 137 62.8
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 1.1e-32 143.3 104 67.3
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 1.0e-30 136.7 104 63.5
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 3.9e-30 134.8 105 69.5
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 6.6e-30 134.0 104 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 2.5e-29 132.1 104 62.5
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 2.5e-29 132.1 101 71.3
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 7.3e-29 130.6 75 90.7
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 9.6e-29 130.2 105 66.7
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 2.0e-26 122.5 75 81.3
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 2.6e-26 122.1 101 66.3
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.6e-23 112.8 108 60.2
vmacro18402 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 6.0e-23 110.9 85 70.6
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 3.9e-22 108.2 60 90.0
CARHR285500 Cardamine hirsuta HOM05D004665 ORTHO05D021400 8.7e-22 107.1 66 83.3
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 2.1e-20 102.4 96 54.2
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 3.4e-18 95.1 103 46.6
CDE02G1303 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 7.6e-18 94.0 53 83.0
CBR_g40440 Chara braunii HOM05D004665 ORTHO05D006264 9.9e-18 93.6 73 63.0
Hma1.2p1_0040F.1_g025010 Hydrangea macrophylla HOM05D004665 ORTHO05D021400 8.2e-12 73.9 42 83.3
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 3.8e-09 65.1 44 61.4
AL8G18270 Arabidopsis lyrata HOM05D004665 ORTHO05D021400 1.9e-08 62.8 33 84.8


User provided reference genes

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