Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.9e-103 378.6 198 100.0
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 8.3e-103 377.1 198 99.5
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.2e-98 360.9 197 95.4
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.2e-98 360.9 197 95.4
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.5e-91 339.0 197 89.8
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-91 338.6 190 93.2
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-91 338.6 190 93.2
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-91 338.6 190 93.2
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.2e-90 336.7 189 93.7
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.6e-90 336.3 190 93.2
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.1e-90 335.9 194 90.7
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.4e-89 333.2 189 93.7
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.4e-89 333.2 189 93.7
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.8e-89 332.8 197 89.3
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.8e-89 332.8 182 95.1
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 5.2e-89 331.3 190 92.1
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 1.2e-88 330.1 197 89.3
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-88 330.1 189 93.1
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 3.4e-88 328.6 189 92.6
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 5.8e-88 327.8 197 87.8
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 3.8e-87 325.1 190 90.5
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 8.7e-84 313.9 180 91.7
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.3e-83 311.6 196 84.7
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.3e-83 311.6 196 84.7
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.1e-82 309.3 195 84.6
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.1e-82 309.3 195 84.6
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.8e-81 306.2 196 83.2
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 6.9e-81 304.3 195 83.1
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.2e-79 299.3 166 93.4
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 2.2e-79 299.3 188 84.6
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 2.2e-79 299.3 188 84.6
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 2.9e-79 298.9 196 83.2
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 2.9e-79 298.9 196 83.2
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 2.4e-78 295.8 165 93.3
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.5e-77 292.0 190 82.6
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 4.6e-77 291.6 190 82.6
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.0e-77 291.2 197 81.2
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.0e-77 291.2 197 81.2
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.0e-76 290.4 152 100.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 3.9e-76 288.5 196 79.6
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 8.7e-76 287.3 186 81.7
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.1e-75 287.0 190 81.6
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 2.5e-75 285.8 189 81.5
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 3.6e-74 282.0 179 81.6
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 1.1e-73 280.4 174 85.1
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.1e-73 280.4 174 85.1
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.5e-72 275.0 171 84.8
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.2e-71 272.7 154 90.3
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 8.4e-71 270.8 159 89.9
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.8e-68 263.1 155 89.7
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 3.3e-67 258.8 148 89.9
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.2e-66 254.6 149 89.9
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.2e-66 254.6 149 89.9
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.5e-64 248.4 145 90.3
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.9e-62 243.0 152 82.9
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 8.7e-60 234.2 131 92.4
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 2.5e-59 232.6 147 82.3
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.6e-58 229.9 142 83.1
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-57 226.9 149 77.9
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.4e-57 226.1 148 81.1
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 6.9e-57 224.6 133 88.0
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 5.9e-56 221.5 184 68.5
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 5.9e-56 221.5 184 68.5
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 5.9e-56 221.5 184 68.5
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 3.2e-54 215.7 184 66.3
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 9.3e-54 214.2 120 91.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 9.3e-54 214.2 120 91.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 6.7e-52 208.0 142 76.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 5.7e-51 204.9 140 75.0
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.4e-51 204.5 187 64.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 2.8e-50 202.6 173 65.3
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 2.8e-50 202.6 173 65.3
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.4e-49 199.5 109 92.7
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 5.9e-48 194.9 109 91.7
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.7e-48 194.5 130 77.7
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 3.2e-46 189.1 119 81.5
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 6.1e-45 184.9 101 90.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 9.1e-41 171.0 115 81.7
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 5.5e-38 161.8 105 78.1
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 2.7e-37 159.5 97 89.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 6.1e-37 158.3 99 84.8
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.8e-34 149.4 80 95.0
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 8.2e-34 147.9 89 85.4
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 4.5e-32 142.1 86 88.4
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.7e-32 141.4 88 87.5
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.9e-30 136.7 86 84.9
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 4.0e-28 129.0 72 90.3
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-27 124.8 76 82.9
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 1.1e-25 120.9 64 92.2
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 1.1e-25 120.9 75 88.0
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 9.1e-25 117.9 107 62.6
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.0e-23 112.1 78 74.4
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.2e-22 109.4 74 77.0
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.2e-22 109.4 74 77.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.6e-21 107.1 70 81.4
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 4.7e-21 105.5 79 75.9
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 1.4e-20 104.0 64 84.4
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 3.0e-20 102.8 88 62.5
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.8e-20 101.7 82 65.9
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.7e-19 98.6 68 82.4
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 2.9e-15 86.3 50 82.0
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.4e-11 72.8 82 53.7
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 1.7e-10 70.5 43 90.7
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.3e-10 68.2 60 61.7
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-09 67.4 36 88.9
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.4e-09 66.6 41 78.0
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 3.1e-09 66.2 54 72.2
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 1.0e-07 61.2 39 74.4
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 6.6e-07 58.5 38 84.2


User provided reference genes

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