Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy237s002 Aquilegia oxysepala HOM05D000404 ORTHO05D031269 2.6e-74 282.0 139 100.0
Aqoxy2G03092 Aquilegia oxysepala HOM05D000404 ORTHO05D005791 2.6e-74 282.0 139 100.0
Aqoxy179s005 Aquilegia oxysepala HOM05D000404 ORTHO05D031269 2.2e-49 199.1 101 97.0
Dinv38327 Davidia involucrata HOM05D000404 ORTHO05D005791 3.7e-41 171.8 139 58.3
Dinv44427 Davidia involucrata HOM05D000404 ORTHO05D005791 3.7e-41 171.8 139 56.8
MD13G1174000 Malus domestica HOM05D000404 ORTHO05D005791 3.7e-41 171.8 134 60.4
QL06p007345 Quercus lobata HOM05D000404 ORTHO05D005791 6.4e-41 171.0 139 61.9
TAR365G0265 Trochodendron aralioides HOM05D000404 ORTHO05D005791 6.4e-41 171.0 141 60.3
MD16G1175300 Malus domestica HOM05D000404 ORTHO05D005791 8.3e-41 170.6 129 61.2
CiPaw.01G153400 Carya illinoinensis HOM05D000404 ORTHO05D005791 3.2e-40 168.7 135 60.7
Cpa.g.sc16.112 Carica papaya HOM05D000404 ORTHO05D005791 1.2e-39 166.8 134 59.0
TWI73G0089 Tripterygium wilfordii HOM05D000404 ORTHO05D005791 6.0e-39 164.5 128 60.9
FAN12G2473 Fragaria x ananassa HOM05D000404 ORTHO05D005791 3.9e-38 161.8 134 58.2
FAN12G3224 Fragaria x ananassa HOM05D000404 ORTHO05D005791 3.9e-38 161.8 134 58.2
RcHm_v2.0_Chr4g0420971 Rosa chinensis HOM05D000404 ORTHO05D005791 8.6e-38 160.6 134 57.5
arahy.Tifrunner.gnm1.ann1.I36EUT Arachis hypogaea HOM05D000404 ORTHO05D005791 1.1e-37 160.2 136 59.6
Hma1.2p1_0823F.1_g224600 Hydrangea macrophylla HOM05D000404 ORTHO05D005791 1.5e-37 159.8 139 56.1
VMungo0540G0329 Vigna mungo HOM05D000404 ORTHO05D005791 1.5e-37 159.8 141 61.0
CANSAT78G2211 Cannabis sativa HOM05D000404 ORTHO05D005791 2.5e-37 159.1 113 63.7
Cfa015495 Carpinus fangiana HOM05D000404 ORTHO05D005791 3.3e-37 158.7 135 58.5
Actinidia00051 Actinidia chinensis HOM05D000404 ORTHO05D005791 4.3e-37 158.3 139 56.1
Cfa015494 Carpinus fangiana HOM05D000404 ORTHO05D005791 4.3e-37 158.3 135 57.8
FAN22G2151 Fragaria x ananassa HOM05D000404 ORTHO05D005791 5.6e-37 157.9 134 56.7
Prupe.1G142400 Prunus persica HOM05D000404 ORTHO05D005791 5.6e-37 157.9 134 56.0
Thecc.04G277400 Theobroma cacao HOM05D000404 ORTHO05D005791 5.6e-37 157.9 140 60.0
Ciclev10004689m.g Citrus clementina HOM05D000404 ORTHO05D005791 7.3e-37 157.5 139 55.4
Duzib151G0511 Durio zibethinus HOM05D000404 ORTHO05D005791 7.3e-37 157.5 135 57.0
FAN17G2506 Fragaria x ananassa HOM05D000404 ORTHO05D005791 7.3e-37 157.5 134 56.7
Haze_01059 Corylus avellana HOM05D000404 ORTHO05D005791 9.5e-37 157.1 134 57.5
FvH4_4g17180 Fragaria vesca HOM05D000404 ORTHO05D005791 1.2e-36 156.8 134 57.5
Nn4g26029 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.6e-36 156.4 138 57.2
LjContig00389g0014251 Lotus japonicus HOM05D000404 ORTHO05D005791 2.1e-36 156.0 141 57.4
Manes.03G191000 Manihot esculenta HOM05D000404 ORTHO05D005791 2.8e-36 155.6 140 56.4
arahy.Tifrunner.gnm1.ann1.60DV95 Arachis hypogaea HOM05D000404 ORTHO05D005791 3.6e-36 155.2 136 58.8
Gohir.D10G166400 Gossypium hirsutum HOM05D000404 ORTHO05D005791 3.6e-36 155.2 135 55.6
Nn3g21297 Nelumbo nucifera HOM05D000404 ORTHO05D005791 4.7e-36 154.8 145 56.6
Gorai.011G185700 Gossypium raimondii HOM05D000404 ORTHO05D005791 6.2e-36 154.5 135 55.6
MBI18_g29028_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 6.2e-36 154.5 139 54.7
Phvul.006G161200 Phaseolus vulgaris HOM05D000404 ORTHO05D005791 6.2e-36 154.5 141 60.3
Glyma.15G098100 Glycine max HOM05D000404 ORTHO05D005791 1.1e-35 153.7 139 56.1
CSS0006318 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 1.4e-35 153.3 141 53.9
CSS0040095 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 1.4e-35 153.3 140 54.3
Duzib052G0769 Durio zibethinus HOM05D000404 ORTHO05D005791 1.4e-35 153.3 135 56.3
Glyma.13G215000 Glycine max HOM05D000404 ORTHO05D005791 1.4e-35 153.3 136 56.6
Hund24912 Selenicereus undatus HOM05D000404 ORTHO05D005791 3.1e-35 152.1 139 51.8
Potri.008G204200 Populus trichocarpa HOM05D000404 ORTHO05D005791 4.0e-35 151.8 134 53.0
FAN07G0337 Fragaria x ananassa HOM05D000404 ORTHO05D005791 5.2e-35 151.4 134 57.5
Oeu007862.1 Olea europaea HOM05D000404 ORTHO05D005791 5.2e-35 151.4 140 55.0
Gohir.A10G101605 Gossypium hirsutum HOM05D000404 ORTHO05D005791 8.9e-35 150.6 135 54.8
MBI18_g42097_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 1.2e-34 150.2 141 53.2
Hund24913 Selenicereus undatus HOM05D000404 ORTHO05D005791 1.5e-34 149.8 139 53.2
CAN.G223.10 Capsicum annuum HOM05D000404 ORTHO05D005791 2.6e-34 149.1 139 52.5
COL.COLO4_13931 Corchorus olitorius HOM05D000404 ORTHO05D005791 4.4e-34 148.3 140 54.3
Nitab4.5_0000784g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 4.4e-34 148.3 114 57.0
Sabra08G0157500 Salix brachista HOM05D000404 ORTHO05D005791 5.8e-34 147.9 139 54.0
Lalb_Chr18g0055731 Lupinus albus HOM05D000404 ORTHO05D005791 1.3e-33 146.7 117 58.1
Lalb_Chr20g0118131 Lupinus albus HOM05D000404 ORTHO05D005791 1.3e-33 146.7 128 55.5
Atru.chr4.2752 Acer truncatum HOM05D000404 ORTHO05D005791 2.2e-33 146.0 126 52.4
ClCG06G005390 Citrullus lanatus HOM05D000404 ORTHO05D005791 2.9e-33 145.6 117 59.8
CsaV3_6G005730 Cucumis sativus L. HOM05D000404 ORTHO05D005791 4.9e-33 144.8 140 54.3
Ca_00575_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005791 8.3e-33 144.1 117 58.1
Lj6A669G30 Lonicera japonica HOM05D000404 ORTHO05D005791 8.3e-33 144.1 141 53.2
Peaxi162Scf00386g00222 Petunia axillaris HOM05D000404 ORTHO05D005791 8.3e-33 144.1 139 50.4
Oeu062885.1 Olea europaea HOM05D000404 ORTHO05D005791 1.4e-32 143.3 117 56.4
MSTRG.10053 Avicennia marina HOM05D000404 ORTHO05D005791 3.2e-32 142.1 139 49.6
Nitab4.5_0000191g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 3.2e-32 142.1 139 51.1
Solyc01g067660.3 Solanum lycopersicum HOM05D000404 ORTHO05D005791 3.2e-32 142.1 139 49.6
MELO3C021362.2 Cucumis melo HOM05D000404 ORTHO05D005791 4.1e-32 141.7 114 59.6
Gohir.D02G052000 Gossypium hirsutum HOM05D000404 ORTHO05D005791 4.1e-32 141.7 140 48.6
Sopen01g029610 Solanum pennellii HOM05D000404 ORTHO05D005791 4.1e-32 141.7 139 49.6
Gohir.A02G046300 Gossypium hirsutum HOM05D000404 ORTHO05D005791 7.1e-32 141.0 140 49.3
Medtr2g020240 Medicago truncatula HOM05D000404 ORTHO05D005791 7.1e-32 141.0 121 57.0
Psat1g187120 Pisum sativum HOM05D000404 ORTHO05D005791 7.1e-32 141.0 121 57.9
PSO170G0635 Papaver somniferum HOM05D000404 ORTHO05D005791 1.6e-31 139.8 141 53.2
Cc03_g02380 Coffea canephora HOM05D000404 ORTHO05D005791 2.1e-31 139.4 114 55.3
Sed0000536 Sechium edule HOM05D000404 ORTHO05D005791 2.1e-31 139.4 134 55.2
TPR.G1496 Trifolium pratense HOM05D000404 ORTHO05D005791 2.1e-31 139.4 141 53.2
PGSC0003DMG400010664 Solanum tuberosum HOM05D000404 ORTHO05D005791 2.7e-31 139.0 139 49.6
PSO210G4605 Papaver somniferum HOM05D000404 ORTHO05D005791 4.6e-31 138.3 141 52.5
vmacro22596 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 4.6e-31 138.3 139 50.4
Gorai.005G057300 Gossypium raimondii HOM05D000404 ORTHO05D005791 6.0e-31 137.9 126 50.0
SalBow2G2518 Salvia bowleyana HOM05D000404 ORTHO05D005791 3.9e-30 135.2 139 47.5
HanXRQChr03g0080071 Helianthus annuus HOM05D000404 ORTHO05D005791 5.1e-30 134.8 137 50.4
Eucgr.H03767 Eucalyptus grandis HOM05D000404 ORTHO05D005791 6.6e-30 134.4 140 49.3
PGR015G0006 Punica granatum HOM05D000404 ORTHO05D005791 8.6e-30 134.0 137 49.6
PGR104G0002 Punica granatum HOM05D000404 ORTHO05D005791 8.6e-30 134.0 137 49.6
DCAR_024613 Daucus carota HOM05D000404 ORTHO05D005791 5.6e-29 131.3 117 54.7
HPP92_013694 Vanilla planifolia HOM05D000404 ORTHO05D005791 5.6e-29 131.3 138 48.6
Lsat_1_v5_gn_5_50601 Lactuca sativa HOM05D000404 ORTHO05D005791 9.5e-29 130.6 139 46.0
EL10Ac3g06555 Beta vulgaris HOM05D000404 ORTHO05D005791 1.6e-28 129.8 115 53.0
Oeu042397.1 Olea europaea HOM05D000404 ORTHO05D031269 2.1e-28 129.4 127 54.3
Sc19g0004940 Simmondsia chinensis HOM05D000404 ORTHO05D005791 2.1e-28 129.4 121 55.4
THA.LOC104827120 Tarenaya hassleriana HOM05D000404 ORTHO05D005791 8.1e-28 127.5 131 48.9
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 3.1e-27 125.6 115 49.6
ECA240G3803 Erigeron canadensis HOM05D000084 ORTHO05D000363 3.1e-27 125.6 112 51.8
AL3G17330 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 6.8e-27 124.4 112 53.6
AUR62041243 Chenopodium quinoa HOM05D000404 ORTHO05D005791 6.8e-27 124.4 115 53.0
SalBow5G1198 Salvia bowleyana HOM05D000404 ORTHO05D005791 8.9e-27 124.0 118 47.5
SalBow5G2195 Salvia bowleyana HOM05D000404 ORTHO05D005791 8.9e-27 124.0 118 47.5
Sp6g25670 Schrenkiella parvula HOM05D000404 ORTHO05D005791 8.9e-27 124.0 132 49.2
AT5G18670 Arabidopsis thaliana HOM05D000404 ORTHO05D005791 3.4e-26 122.1 127 49.6
BraA03t10226Z Brassica rapa HOM05D000404 ORTHO05D005791 3.4e-26 122.1 126 48.4
Lsat_1_v5_gn_5_50720 Lactuca sativa HOM05D000404 ORTHO05D005791 3.4e-26 122.1 141 44.7
BcaB01g05257 Brassica carinata HOM05D000404 ORTHO05D005791 4.4e-26 121.7 126 49.2
C03p10500 Brassica napus HOM05D000404 ORTHO05D005791 4.4e-26 121.7 126 49.2
BolC3t13532H Brassica oleracea HOM05D000404 ORTHO05D005791 4.4e-26 121.7 126 49.2
AUR62014139 Chenopodium quinoa HOM05D000404 ORTHO05D005791 7.6e-26 120.9 115 50.4
A03p09020 Brassica napus HOM05D000404 ORTHO05D005791 1.3e-25 120.2 126 47.6
A10p20890 Brassica napus HOM05D000404 ORTHO05D005791 1.7e-25 119.8 112 52.7
Thhalv10013215m.g Eutrema salsugineum HOM05D000404 ORTHO05D005791 1.7e-25 119.8 130 47.7
Sc13g0003610 Simmondsia chinensis HOM05D000404 ORTHO05D005791 2.2e-25 119.4 137 48.2
BraA10t44154Z Brassica rapa HOM05D000404 ORTHO05D005791 3.7e-25 118.6 112 51.8
AL6G29950 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 4.9e-25 118.2 112 51.8
BcaC04g18656 Brassica carinata HOM05D000404 ORTHO05D005791 4.9e-25 118.2 112 51.8
BolC9t58648H Brassica oleracea HOM05D000404 ORTHO05D005791 4.9e-25 118.2 112 51.8
Carub.0006s1697 Capsella rubella HOM05D000404 ORTHO05D005791 2.4e-24 115.9 127 47.2
CARHR194330 Cardamine hirsuta HOM05D000404 ORTHO05D005791 2.4e-24 115.9 132 45.5
Aa31LG11G10950 Aethionema arabicum HOM05D000404 ORTHO05D005791 1.6e-23 113.2 136 43.4
C09p57790 Brassica napus HOM05D000404 ORTHO05D005791 1.6e-23 113.2 112 50.0
CDE01G0466 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 3.5e-23 112.1 139 40.3
vmacro15257 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 1.3e-22 110.2 93 51.6
unitig_748.g8576 Utricularia gibba HOM05D000404 ORTHO05D005791 1.1e-21 107.1 106 50.0
Zm00001eb330060 Zea mays HOM05D000404 ORTHO05D005791 3.3e-21 105.5 131 45.0
unitig_32.g11750 Utricularia gibba HOM05D000404 ORTHO05D005791 4.3e-21 105.1 110 49.1
CDE12G0716 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 9.6e-21 104.0 140 40.7
HanXRQChr03g0080091 Helianthus annuus HOM05D000404 ORTHO05D005791 2.0e-18 96.3 88 51.1
Migut.G00212 Erythranthe guttata HOM05D000404 ORTHO05D005791 5.8e-18 94.7 105 46.7
Os07g0667100 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 5.8e-18 94.7 114 43.0
ATR0706G226 Amborella trichopoda HOM05D000404 ORTHO05D005791 7.6e-18 94.4 113 43.4
CDE05G3429 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 2.7e-15 85.9 140 37.9
SGA_v2.0_scaffold142G35699 Striga asiatica HOM05D000404 ORTHO05D005791 4.6e-15 85.1 128 40.6
Zm00001eb394710 Zea mays HOM05D000404 ORTHO05D005791 2.1e-12 76.3 146 32.9
Os03g0351300 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 3.6e-12 75.5 145 32.4
Zm00001eb016880 Zea mays HOM05D000404 ORTHO05D005791 4.0e-11 72.0 119 36.1
Zm00001eb016920 Zea mays HOM05D000404 ORTHO05D005791 6.9e-11 71.2 119 35.3
CARHR080910 Cardamine hirsuta HOM05D000404 ORTHO05D005791 4.4e-10 68.6 58 55.2
Mapoly0044s0023 Marchantia polymorpha HOM05D000404 ORTHO05D001765 7.6e-10 67.8 109 33.9
SEGI_02091 Sequoiadendron giganteum HOM05D000404 ORTHO05D005791 1.7e-09 66.6 136 30.1
Mapoly0008s0172 Marchantia polymorpha HOM05D000404 ORTHO05D001765 8.7e-06 54.3 112 30.4
Solyc08g007130.4 Solanum lycopersicum HOM05D000404 ORTHO05D001765 8.7e-06 54.3 124 29.8


User provided reference genes

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