Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy22s006 Aquilegia oxysepala HOM05D000322 ORTHO05D000186 7.6e-28 126.3 59 100.0
Aqoxy4G00952 Aquilegia oxysepala HOM05D000322 ORTHO05D000186 1.1e-13 79.3 54 61.1
Os03g0300400 Oryza sativa ssp. japonica HOM05D000322 ORTHO05D000186 1.0e-11 72.8 55 54.5
CiPaw.01G143900 Carya illinoinensis HOM05D000322 ORTHO05D000186 1.3e-11 72.4 54 61.1
VMungo1309G1590 Vigna mungo HOM05D000322 ORTHO05D000186 2.2e-11 71.6 54 57.4
Ca_21501_v3 Cicer arietinum L. HOM05D000322 ORTHO05D000186 2.9e-11 71.2 54 57.4
Lj4g0003328 Lotus japonicus HOM05D000322 ORTHO05D000186 2.9e-11 71.2 54 57.4
arahy.Tifrunner.gnm1.ann1.P1AGI1 Arachis hypogaea HOM05D000322 ORTHO05D000186 3.8e-11 70.9 55 56.4
arahy.Tifrunner.gnm1.ann1.U9V6M4 Arachis hypogaea HOM05D000322 ORTHO05D000186 3.8e-11 70.9 55 56.4
Hma1.2p1_0078F.1_g040240 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 3.8e-11 70.9 53 60.4
Medtr4g120760 Medicago truncatula HOM05D000322 ORTHO05D000186 3.8e-11 70.9 57 54.4
TPR.G21805 Trifolium pratense HOM05D000322 ORTHO05D000186 3.8e-11 70.9 57 52.6
Psat4g024960 Pisum sativum HOM05D000322 ORTHO05D000186 5.0e-11 70.5 57 54.4
Glyma.07G243900 Glycine max HOM05D000322 ORTHO05D000186 6.5e-11 70.1 54 57.4
Zm00001eb013990 Zea mays HOM05D000322 ORTHO05D000186 6.5e-11 70.1 55 54.5
Zm00001eb014000 Zea mays HOM05D000322 ORTHO05D000186 6.5e-11 70.1 55 54.5
VMungo1215G1370 Vigna mungo HOM05D000322 ORTHO05D000186 8.5e-11 69.7 54 57.4
Glyma.17G030000 Glycine max HOM05D000322 ORTHO05D000186 1.4e-10 68.9 54 55.6
Phvul.003G109000 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.4e-10 68.9 54 55.6
Zm00001eb014010 Zea mays HOM05D000322 ORTHO05D000186 1.4e-10 68.9 55 50.9
arahy.Tifrunner.gnm1.ann1.SH86H7 Arachis hypogaea HOM05D000322 ORTHO05D000186 2.5e-10 68.2 54 55.6
Glyma.15G146600 Glycine max HOM05D000322 ORTHO05D000186 3.2e-10 67.8 54 55.6
QL06p010958 Quercus lobata HOM05D000322 ORTHO05D000186 3.2e-10 67.8 54 55.6
TAR365G0633 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.2e-10 67.8 54 57.4
MBI19_g05145_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 4.2e-10 67.4 55 52.7
Nn4g25699 Nelumbo nucifera HOM05D000322 ORTHO05D000186 4.2e-10 67.4 54 55.6
Aqoxy4G00953 Aquilegia oxysepala HOM05D000322 ORTHO05D000186 5.5e-10 67.0 52 51.9
arahy.Tifrunner.gnm1.ann1.DCNL5J Arachis hypogaea HOM05D000322 ORTHO05D000186 5.5e-10 67.0 54 53.7
Nn4g25703 Nelumbo nucifera HOM05D000322 ORTHO05D000186 5.5e-10 67.0 54 57.4
Phvul.009G252300 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 5.5e-10 67.0 54 53.7
TAR365G1188 Trochodendron aralioides HOM05D000322 ORTHO05D000186 5.5e-10 67.0 53 58.5
vmacro08096 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 5.5e-10 67.0 53 58.5
MSTRG.24653 Avicennia marina HOM05D000322 ORTHO05D000186 9.4e-10 66.2 53 54.7
Lalb_Chr12g0201071 Lupinus albus HOM05D000322 ORTHO05D000186 9.4e-10 66.2 55 50.9
Thecc.04G291500 Theobroma cacao HOM05D000322 ORTHO05D000186 9.4e-10 66.2 53 58.5
Lalb_Chr07g0182221 Lupinus albus HOM05D000322 ORTHO05D000186 1.2e-09 65.9 54 51.9
Cfa015453 Carpinus fangiana HOM05D000322 ORTHO05D000186 1.6e-09 65.5 54 55.6
TAR636G1643 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.7e-09 64.7 53 56.6
CAN.G1013.38 Capsicum annuum HOM05D000322 ORTHO05D000186 4.7e-09 63.9 54 50.0
TAR365G0344 Trochodendron aralioides HOM05D000322 ORTHO05D000186 4.7e-09 63.9 53 54.7
Dinv44335 Davidia involucrata HOM05D000322 ORTHO05D000186 6.1e-09 63.5 54 55.6
Duzib052G0424 Durio zibethinus HOM05D000322 ORTHO05D000186 6.1e-09 63.5 53 54.7
Nn4g25702 Nelumbo nucifera HOM05D000322 ORTHO05D000186 6.1e-09 63.5 53 50.9
QL06p010964 Quercus lobata HOM05D000322 ORTHO05D000186 6.1e-09 63.5 54 55.6
Duzib151G0406 Durio zibethinus HOM05D000322 ORTHO05D000186 7.9e-09 63.2 54 55.6
TAR362G0260 Trochodendron aralioides HOM05D000322 ORTHO05D000186 7.9e-09 63.2 54 55.6
TAR362G0501 Trochodendron aralioides HOM05D000322 ORTHO05D000186 7.9e-09 63.2 53 52.8
Nn3g21582 Nelumbo nucifera HOM05D000322 ORTHO05D000186 1.0e-08 62.8 56 48.2
Nn4g25700 Nelumbo nucifera HOM05D000322 ORTHO05D000186 1.0e-08 62.8 53 50.9
Actinidia40310 Actinidia chinensis HOM05D000322 ORTHO05D000186 1.4e-08 62.4 54 57.4
TAR365G1193 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.4e-08 62.4 53 52.8
MSTRG.24810 Avicennia marina HOM05D000322 ORTHO05D000186 1.8e-08 62.0 54 50.0
CSS0032688 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.8e-08 62.0 54 51.9
Ca_01893_v3 Cicer arietinum L. HOM05D000322 ORTHO05D000186 1.8e-08 62.0 55 45.5
Ca_01900_v3 Cicer arietinum L. HOM05D000322 ORTHO05D000186 1.8e-08 62.0 55 45.5
Cc03_g01310 Coffea canephora HOM05D000322 ORTHO05D000186 1.8e-08 62.0 54 50.0
Dinv29706 Davidia involucrata HOM05D000322 ORTHO05D000186 1.8e-08 62.0 53 50.9
Oeu033817.1 Olea europaea HOM05D000322 ORTHO05D000186 1.8e-08 62.0 54 51.9
TAR365G0485 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.8e-08 62.0 53 50.9
MSTRG.21926 Avicennia marina HOM05D000322 ORTHO05D000186 2.3e-08 61.6 53 54.7
CiPaw.02G078500 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.3e-08 61.6 54 51.9
Haze_01135 Corylus avellana HOM05D000322 ORTHO05D000186 2.3e-08 61.6 53 54.7
Thecc.04G291600 Theobroma cacao HOM05D000322 ORTHO05D000186 2.3e-08 61.6 54 55.6
TAR365G0876 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.3e-08 61.6 53 54.7
HPP92_013740 Vanilla planifolia HOM05D000322 ORTHO05D000186 2.3e-08 61.6 52 48.1
CiPaw.01G143800 Carya illinoinensis HOM05D000322 ORTHO05D000186 3.0e-08 61.2 54 51.9
Medtr2g435310 Medicago truncatula HOM05D000322 ORTHO05D000186 3.0e-08 61.2 54 46.3
Nn4g25704 Nelumbo nucifera HOM05D000322 ORTHO05D000186 3.0e-08 61.2 53 49.1
COL.COLO4_34691 Corchorus olitorius HOM05D000322 ORTHO05D000186 3.9e-08 60.8 54 51.9
Rhsim04G0228500 Rhododendron simsii HOM05D000322 ORTHO05D000186 3.9e-08 60.8 53 50.9
TAR636G0552 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.9e-08 60.8 54 48.1
COL.COLO4_34692 Corchorus olitorius HOM05D000322 ORTHO05D000186 5.1e-08 60.5 53 52.8
Eucgr.A00133 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.1e-08 60.5 53 50.9
MD13G1161700 Malus domestica HOM05D000322 ORTHO05D000186 5.1e-08 60.5 53 54.7
Nitab4.5_0005180g0040 Nicotiana tabacum HOM05D000322 ORTHO05D000186 5.1e-08 60.5 54 48.1
TAR362G0165 Trochodendron aralioides HOM05D000322 ORTHO05D000186 5.1e-08 60.5 53 50.9
Actinidia18637 Actinidia chinensis HOM05D000322 ORTHO05D000186 8.8e-08 59.7 54 55.6
Dinv29697 Davidia involucrata HOM05D000322 ORTHO05D000186 8.8e-08 59.7 53 50.9
Psat1g156720 Pisum sativum HOM05D000322 ORTHO05D000186 8.8e-08 59.7 54 46.3
RcHm_v2.0_Chr4g0423851 Rosa chinensis HOM05D000322 ORTHO05D000186 8.8e-08 59.7 53 52.8
PGSC0003DMG400023435 Solanum tuberosum HOM05D000322 ORTHO05D000186 8.8e-08 59.7 56 50.0
TAR362G0513 Trochodendron aralioides HOM05D000322 ORTHO05D000186 8.8e-08 59.7 53 50.9
HPP92_025195 Vanilla planifolia HOM05D000322 ORTHO05D000186 8.8e-08 59.7 52 48.1
HPP92_025196 Vanilla planifolia HOM05D000322 ORTHO05D000186 8.8e-08 59.7 52 48.1
MSTRG.21928 Avicennia marina HOM05D000322 ORTHO05D000186 1.1e-07 59.3 54 51.9
Eucgr.A00125 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.1e-07 59.3 53 49.1
FAN12G1697 Fragaria x ananassa HOM05D000322 ORTHO05D000186 1.1e-07 59.3 53 52.8
Solyc05g054380.2 Solanum lycopersicum HOM05D000322 ORTHO05D000186 1.1e-07 59.3 56 50.0
TAR362G0333 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.1e-07 59.3 53 52.8
FvH4_4g18951 Fragaria vesca HOM05D000322 ORTHO05D000186 1.5e-07 58.9 53 52.8
FAN12G3628 Fragaria x ananassa HOM05D000322 ORTHO05D000186 1.5e-07 58.9 53 52.8
TPR.G28476 Trifolium pratense HOM05D000322 ORTHO05D000186 1.5e-07 58.9 54 44.4
Dinv29694 Davidia involucrata HOM05D000322 ORTHO05D000186 2.0e-07 58.5 53 50.9
Eucgr.A00141 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.0e-07 58.5 53 49.1
Eucgr.H03972 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.0e-07 58.5 54 48.1
Prupe.1G129000 Prunus persica HOM05D000322 ORTHO05D000186 2.0e-07 58.5 53 50.9
MSTRG.24654 Avicennia marina HOM05D000322 ORTHO05D000186 2.6e-07 58.2 51 51.0
Manes.15G008700 Manihot esculenta HOM05D000322 ORTHO05D000186 2.6e-07 58.2 51 51.0
PGR031G3369 Punica granatum HOM05D000322 ORTHO05D000186 2.6e-07 58.2 54 48.1
TAR365G0071 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.6e-07 58.2 53 52.8
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.6e-07 58.2 53 50.9
Dinv11662 Davidia involucrata HOM05D000322 ORTHO05D000186 3.3e-07 57.8 56 53.6
Potri.008G212100 Populus trichocarpa HOM05D000322 ORTHO05D000186 3.3e-07 57.8 54 50.0
TWI53G0365 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.3e-07 57.8 54 48.1
TAR636G2675 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.3e-07 57.8 53 50.9
Dinv44336 Davidia involucrata HOM05D000322 ORTHO05D000186 4.4e-07 57.4 53 50.9
Migut.G00117 Erythranthe guttata HOM05D000322 ORTHO05D000186 4.4e-07 57.4 54 46.3
Nn8g41278 Nelumbo nucifera HOM05D000322 ORTHO05D000186 4.4e-07 57.4 53 47.2
Sc05g0003460 Simmondsia chinensis HOM05D000322 ORTHO05D000186 4.4e-07 57.4 54 46.3
Dinv29703 Davidia involucrata HOM05D000322 ORTHO05D000186 5.7e-07 57.0 52 51.9
Dinv44331 Davidia involucrata HOM05D000322 ORTHO05D000186 5.7e-07 57.0 52 55.8
Eucgr.I00897 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.7e-07 57.0 51 49.0
Eucgr.I00898 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.7e-07 57.0 51 49.0
Hma1.2p1_0013F.1_g009076 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 5.7e-07 57.0 54 50.0
Hma1.2p1_0013F.1_g009090 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 5.7e-07 57.0 54 50.0
Oeu047125.1 Olea europaea HOM05D000322 ORTHO05D000186 5.7e-07 57.0 53 43.4
Oeu047128.1 Olea europaea HOM05D000322 ORTHO05D000186 5.7e-07 57.0 53 43.4
ECA248G0896 Erigeron canadensis HOM05D000322 ORTHO05D000186 7.4e-07 56.6 54 44.4
Oeu047131.1 Olea europaea HOM05D000322 ORTHO05D000186 7.4e-07 56.6 53 43.4
PGR004G1963 Punica granatum HOM05D000322 ORTHO05D000186 7.4e-07 56.6 54 48.1
SalBow8G1005 Salvia bowleyana HOM05D000322 ORTHO05D000186 7.4e-07 56.6 53 50.9
Dinv29705 Davidia involucrata HOM05D000322 ORTHO05D000186 9.7e-07 56.2 54 50.0
Eucgr.I00896 Eucalyptus grandis HOM05D000322 ORTHO05D000186 9.7e-07 56.2 51 47.1
SGA_v2.0_scaffold577G53019 Striga asiatica HOM05D000322 ORTHO05D000186 9.7e-07 56.2 54 42.6
Ciclev10006102m.g Citrus clementina HOM05D000322 ORTHO05D000186 1.3e-06 55.8 53 50.9
MBI18_g04577_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.3e-06 55.8 54 48.1
Rhsim04G0229800 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.3e-06 55.8 52 51.9
TAR362G0420 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.3e-06 55.8 53 49.1
Dinv44328 Davidia involucrata HOM05D000322 ORTHO05D000186 1.7e-06 55.5 53 45.3
Eucgr.H03981 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.7e-06 55.5 50 46.0
Eucgr.I00900 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.7e-06 55.5 51 49.0
Eucgr.I00902 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.7e-06 55.5 51 49.0
Lj6g0010527 Lotus japonicus HOM05D000322 ORTHO05D000186 1.7e-06 55.5 49 49.0
Oeu047127.1 Olea europaea HOM05D000322 ORTHO05D000186 1.7e-06 55.5 53 43.4
RcHm_v2.0_Chr6g0294541 Rosa chinensis HOM05D000322 ORTHO05D000186 1.7e-06 55.5 54 42.6
SEGI_04706 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.7e-06 55.5 50 50.0
Thecc.04G292800 Theobroma cacao HOM05D000322 ORTHO05D000186 1.7e-06 55.5 52 48.1
VMungo1309G0974 Vigna mungo HOM05D000322 ORTHO05D000186 1.7e-06 55.5 54 40.7
Cfa015456 Carpinus fangiana HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 49.1
Migut.G00118 Erythranthe guttata HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 49.1
FAN15G3653 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.2e-06 55.1 54 42.6
FAN20G0462 Fragaria x ananassa HOM05D000322 ORTHO05D000186 2.2e-06 55.1 54 42.6
FAN27G1998 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.2e-06 55.1 54 42.6
Nitab4.5_0000194g0170 Nicotiana tabacum HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 47.2
PGR031G3782 Punica granatum HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 47.2
Sabra08G0150600 Salix brachista HOM05D000322 ORTHO05D000186 2.2e-06 55.1 54 48.1
TAR365G1225 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 47.2
TAR365G1252 Trochodendron aralioides HOM05D000322 ORTHO05D000186 2.2e-06 55.1 53 49.1
GSVIVG01035054001 Vitis vinifera HOM05D000322 ORTHO05D000186 2.2e-06 55.1 50 48.0
Migut.N00310 Erythranthe guttata HOM05D000322 ORTHO05D000186 2.8e-06 54.7 53 52.8
MBI19_g05146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 2.8e-06 54.7 52 44.2
PGR031G0367 Punica granatum HOM05D000322 ORTHO05D000186 2.8e-06 54.7 53 47.2
SalBow3G1927 Salvia bowleyana HOM05D000322 ORTHO05D000186 2.8e-06 54.7 53 49.1
SalBow3G3149 Salvia bowleyana HOM05D000322 ORTHO05D000186 2.8e-06 54.7 53 49.1
CANSAT78G0814 Cannabis sativa HOM05D000322 ORTHO05D000186 3.7e-06 54.3 54 48.1
Haze_01118 Corylus avellana HOM05D000322 ORTHO05D000186 3.7e-06 54.3 54 44.4
Dinv29704 Davidia involucrata HOM05D000322 ORTHO05D000186 3.7e-06 54.3 54 46.3
Migut.N00308 Erythranthe guttata HOM05D000322 ORTHO05D000186 3.7e-06 54.3 51 45.1
Eucgr.H03987 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.7e-06 54.3 51 47.1
Eucgr.H03993 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.7e-06 54.3 51 47.1
FvH4_2g26151 Fragaria vesca HOM05D000322 ORTHO05D000186 3.7e-06 54.3 54 44.4
FAN24G1175 Fragaria x ananassa HOM05D000141 ORTHO05D000780 3.7e-06 54.3 54 44.4
Lsat_1_v5_gn_1_42421 Lactuca sativa HOM05D000322 ORTHO05D000186 3.7e-06 54.3 54 40.7
Nitab4.5_0007351g0020 Nicotiana tabacum HOM05D000322 ORTHO05D000186 3.7e-06 54.3 53 47.2
Oeu047124.1 Olea europaea HOM05D000322 ORTHO05D000186 3.7e-06 54.3 53 43.4
SEGI_16799 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 3.7e-06 54.3 50 46.0
TAR365G0592 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.7e-06 54.3 53 49.1
Actinidia18638 Actinidia chinensis HOM05D000322 ORTHO05D000186 4.8e-06 53.9 54 46.3
Actinidia40311 Actinidia chinensis HOM05D000322 ORTHO05D000186 4.8e-06 53.9 54 46.3
MSTRG.10122 Avicennia marina HOM05D000322 ORTHO05D000186 4.8e-06 53.9 54 42.6
Dinv29693 Davidia involucrata HOM05D000322 ORTHO05D000186 4.8e-06 53.9 53 47.2
Lj3A826T86 Lonicera japonica HOM05D000322 ORTHO05D000186 4.8e-06 53.9 54 48.1
PGR031G3450 Punica granatum HOM05D000322 ORTHO05D000186 4.8e-06 53.9 53 49.1
Solyc09g090970.4 Solanum lycopersicum HOM05D000322 ORTHO05D000186 4.8e-06 53.9 53 43.4
Sopen09g033940 Solanum pennellii HOM05D000322 ORTHO05D000186 4.8e-06 53.9 53 43.4
Eucgr.H03995 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.3e-06 53.5 51 45.1
Potri.010G000600 Populus trichocarpa HOM05D000322 ORTHO05D000186 6.3e-06 53.5 52 48.1
Sc05g0003450 Simmondsia chinensis HOM05D000322 ORTHO05D000186 6.3e-06 53.5 44 52.3
CAN.G524.15 Capsicum annuum HOM05D000322 ORTHO05D000186 8.2e-06 53.1 51 43.1
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 8.2e-06 53.1 53 47.2
PSO170G5380 Papaver somniferum HOM05D000322 ORTHO05D000186 8.2e-06 53.1 53 45.3
QL12p027631 Quercus lobata HOM05D000322 ORTHO05D000186 8.2e-06 53.1 53 49.1


User provided reference genes

Program Settings