Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 9.8e-115 416.8 205 100.0
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 1.8e-44 183.3 171 57.9
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 5.3e-44 181.8 167 59.3
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 5.3e-44 181.8 168 59.5
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 9.1e-44 181.0 170 60.6
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.5e-43 180.3 165 57.6
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 1.5e-43 180.3 174 58.0
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 4.5e-43 178.7 171 57.3
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 5.9e-43 178.3 165 57.0
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.0e-42 177.6 166 58.4
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 1.0e-42 177.6 167 58.7
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 1.0e-42 177.6 167 59.3
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.3e-42 177.2 171 57.3
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.7e-42 176.8 167 60.5
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 2.2e-42 176.4 167 58.7
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 2.9e-42 176.0 175 55.4
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 2.9e-42 176.0 169 56.2
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.9e-42 176.0 171 57.3
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 3.8e-42 175.6 167 56.9
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 8.5e-42 174.5 166 59.6
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.1e-41 174.1 167 56.9
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.4e-41 173.7 167 56.9
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.4e-41 173.7 167 56.9
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.9e-41 173.3 184 52.2
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 2.5e-41 172.9 177 54.2
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.2e-41 172.6 167 56.3
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 3.2e-41 172.6 167 54.5
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 4.2e-41 172.2 167 58.1
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 4.2e-41 172.2 165 57.0
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 4.2e-41 172.2 173 55.5
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 5.5e-41 171.8 165 56.4
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 7.2e-41 171.4 166 57.8
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 1.2e-40 170.6 178 52.8
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 1.2e-40 170.6 182 51.6
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 1.6e-40 170.2 167 58.1
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.6e-40 170.2 165 56.4
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 2.1e-40 169.9 168 54.2
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 2.1e-40 169.9 168 54.2
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 2.1e-40 169.9 166 57.8
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.7e-40 169.5 165 56.4
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 2.7e-40 169.5 167 55.1
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 2.7e-40 169.5 165 56.4
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.6e-40 169.1 166 57.2
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 4.7e-40 168.7 171 56.1
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 4.7e-40 168.7 166 57.2
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 4.7e-40 168.7 168 56.5
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 4.7e-40 168.7 167 56.9
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 6.1e-40 168.3 170 52.9
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 6.1e-40 168.3 166 58.4
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 6.1e-40 168.3 166 56.0
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 6.1e-40 168.3 167 56.3
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 6.1e-40 168.3 167 58.1
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 6.1e-40 168.3 167 56.9
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 6.1e-40 168.3 167 56.9
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 6.1e-40 168.3 174 53.4
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 7.9e-40 167.9 159 57.2
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 7.9e-40 167.9 166 58.4
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.4e-39 167.2 170 54.7
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 1.4e-39 167.2 166 58.4
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.8e-39 166.8 167 55.1
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.8e-39 166.8 167 55.1
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.3e-39 166.4 171 55.0
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.0e-39 166.0 176 54.0
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 3.9e-39 165.6 170 55.9
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.9e-39 165.6 170 55.9
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.9e-39 165.6 205 48.3
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 3.9e-39 165.6 180 52.8
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 5.2e-39 165.2 176 54.0
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.2e-39 165.2 167 55.7
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.7e-39 164.9 171 54.4
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 8.8e-39 164.5 167 55.1
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.1e-38 164.1 171 52.0
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-38 163.7 167 55.1
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.6e-38 162.9 165 55.8
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 3.3e-38 162.5 171 53.8
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 4.4e-38 162.2 165 54.5
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 5.7e-38 161.8 166 55.4
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 5.7e-38 161.8 170 54.7
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 7.4e-38 161.4 166 55.4
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.7e-38 161.0 167 53.3
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 1.3e-37 160.6 166 53.0
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.7e-37 160.2 166 56.0
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 1.7e-37 160.2 117 68.4
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 2.2e-37 159.8 166 54.8
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 2.8e-37 159.5 195 49.2
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 4.8e-37 158.7 166 54.2
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 8.2e-37 157.9 209 45.5
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.1e-36 157.5 169 52.7
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.8e-36 156.8 166 48.8
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 1.8e-36 156.8 166 54.8
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 3.1e-36 156.0 166 50.0
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 4.1e-36 155.6 178 51.1
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 4.1e-36 155.6 173 53.2
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 5.3e-36 155.2 170 50.0
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.2e-35 154.1 166 51.2
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 1.6e-35 153.7 166 53.6
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 5.9e-35 151.8 118 67.8
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.0e-34 151.0 200 45.5
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.9e-34 149.4 115 66.1
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 6.5e-34 148.3 115 67.8
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 2.5e-33 146.4 115 65.2
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 1.6e-32 143.7 180 47.2
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 8.0e-32 141.4 167 49.7
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.2e-30 137.5 129 59.7
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 9.7e-30 134.4 167 50.3
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 9.7e-30 134.4 169 46.7
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.7e-29 133.7 165 49.7
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.8e-29 132.9 143 53.8
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 3.7e-29 132.5 144 53.5
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 5.9e-27 125.2 103 61.2
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 7.7e-27 124.8 165 50.3
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.0e-26 124.4 170 42.4
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.0e-26 124.4 187 45.5
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.7e-26 123.6 170 43.5
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.7e-26 123.6 166 44.0
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 2.9e-26 122.9 135 51.9
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.9e-26 122.9 170 41.8
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 6.5e-26 121.7 70 81.4
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 6.5e-26 121.7 96 63.5
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 8.5e-26 121.3 70 80.0
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 4.2e-25 119.0 70 78.6
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.2e-24 117.5 70 77.1
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 1.6e-24 117.1 118 53.4
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 2.1e-24 116.7 73 74.0
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 2.7e-24 116.3 173 43.4
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 4.7e-24 115.5 162 40.7
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 4.7e-24 115.5 166 45.8
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 4.7e-24 115.5 69 76.8
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 8.0e-24 114.8 70 78.6
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.0e-23 114.4 165 44.8
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 1.0e-23 114.4 79 69.6
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 2.3e-23 113.2 69 76.8
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 4.0e-23 112.5 69 73.9
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 4.0e-23 112.5 69 73.9
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.0e-23 112.5 70 77.1
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 6.8e-23 111.7 69 76.8
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 8.8e-23 111.3 165 41.8
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 8.8e-23 111.3 165 41.8
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.2e-22 110.9 69 76.8
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.2e-22 110.9 90 61.1
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.5e-22 110.5 71 73.2
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 2.0e-22 110.2 70 74.3
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 4.4e-22 109.0 165 40.0
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 4.4e-22 109.0 111 50.5
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 5.7e-22 108.6 69 76.8
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 1.7e-21 107.1 70 72.9
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.8e-21 106.3 65 80.0
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 1.1e-20 104.4 203 37.9
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 3.1e-20 102.8 116 48.3
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 7.7e-19 98.2 158 44.3
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.9e-18 96.3 170 36.5
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 3.2e-17 92.8 73 56.2
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 4.2e-17 92.4 63 66.7
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 5.5e-17 92.0 82 53.7
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 7.2e-17 91.7 166 38.0
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 1.2e-16 90.9 166 39.2
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 2.1e-16 90.1 165 38.2
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.8e-15 87.0 168 38.1
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 6.8e-15 85.1 167 35.9
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 2.4e-12 76.6 50 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 7.0e-12 75.1 65 52.3
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 9.2e-12 74.7 105 42.9
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.2e-11 74.3 80 50.0
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-11 73.9 80 52.5
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-11 73.9 80 52.5
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 1.6e-11 73.9 84 50.0
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 2.7e-11 73.2 42 78.6
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 3.5e-11 72.8 87 48.3
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.5e-11 72.8 80 51.2
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.0e-10 71.2 103 41.7
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.6e-10 68.6 84 46.4
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 1.9e-09 67.0 82 47.6
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 3.3e-09 66.2 163 32.5
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.3e-09 65.9 79 46.8
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 7.3e-09 65.1 91 45.1
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 9.5e-09 64.7 124 37.9
MBI14_g33799_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 8.0e-08 61.6 157 33.8
PRCOL_00000631 Prasinoderma coloniale HOM05D003476 ORTHO05D004057 6.8e-07 58.5 114 32.5
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.0e-06 57.0 68 47.1
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 5.7e-06 55.5 191 28.8
Medtr8g093950 Medicago truncatula HOM05D003476 ORTHO05D004057 9.8e-06 54.7 41 63.4


User provided reference genes

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