Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 0.0e+00 2016.5 1075 100.0
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 5.0e-88 330.5 1023 32.5
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.6e-86 325.5 1321 29.0
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.7e-83 315.5 637 37.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.7e-78 297.4 1087 30.5
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 6.1e-78 297.0 1252 27.6
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 1.0e-77 296.2 1366 27.6
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.0e-77 296.2 1394 26.7
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.9e-77 294.3 1089 30.6
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.1e-74 286.2 618 34.3
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 5.3e-74 283.9 1351 28.2
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.0e-74 283.5 1270 28.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 7.7e-73 280.0 343 50.4
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.7e-72 278.9 1352 28.0
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.2e-72 278.5 1343 27.9
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.1e-71 276.2 1134 28.4
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 3.2e-71 274.6 652 33.0
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.1e-70 271.9 1403 27.3
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 2.7e-70 271.6 513 37.2
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 4.0e-69 267.7 652 33.9
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 8.8e-69 266.5 530 36.0
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 4.4e-68 264.2 417 40.8
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.8e-67 261.5 413 40.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.4e-66 259.2 461 39.0
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.1e-66 258.1 597 34.0
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 2.0e-65 255.4 493 35.7
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 3.8e-64 251.1 1314 26.9
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 1.1e-63 249.6 1340 26.7
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 4.2e-63 247.7 1331 26.0
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 9.4e-63 246.5 1330 26.1
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.2e-62 246.1 521 34.7
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.7e-62 245.0 1334 26.2
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.2e-61 240.7 1328 26.1
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 3.4e-60 238.0 1143 27.7
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.4e-60 237.7 608 33.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 5.7e-60 237.3 624 33.2
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 7.5e-60 236.9 419 37.2
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 3.7e-59 234.6 543 33.9
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.1e-58 231.1 1311 26.3
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 7.0e-58 230.3 1276 26.4
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 2.0e-57 228.8 1145 27.6
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 2.5e-55 221.9 415 36.6
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 5.5e-55 220.7 415 35.9
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 5.5e-55 220.7 1291 26.2
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.2e-54 219.5 420 36.2
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.1e-54 218.8 1113 26.7
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 4.7e-54 217.6 1279 26.7
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 6.1e-54 217.2 1339 25.2
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.4e-53 216.1 1134 25.9
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.4e-53 216.1 1225 25.2
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 1.8e-53 215.7 1253 26.7
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.3e-53 215.3 1124 27.1
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.0e-53 214.9 1181 25.7
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.0e-53 214.9 1181 25.7
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 6.8e-53 213.8 506 32.6
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 2.0e-52 212.2 1138 26.7
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 2.0e-52 212.2 1136 26.6
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 2.0e-52 212.2 1138 26.7
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 2.0e-52 212.2 1302 25.6
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.0e-52 212.2 1152 25.7
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 4.4e-52 211.1 589 30.9
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 7.5e-52 210.3 1175 26.9
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 7.5e-52 210.3 410 33.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 9.8e-52 209.9 486 32.9
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 2.2e-51 208.8 432 35.0
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.8e-51 208.4 419 35.3
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 4.9e-51 207.6 418 33.7
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 6.3e-51 207.2 439 33.9
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.8e-50 205.7 1134 26.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.4e-50 205.3 315 42.9
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 4.1e-50 204.5 1167 25.7
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 9.2e-50 203.4 436 35.6
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 1.2e-49 203.0 522 32.8
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.0e-49 202.2 1146 26.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 3.5e-49 201.4 466 31.3
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 5.9e-49 200.7 1116 25.8
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 5.9e-49 200.7 907 26.5
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 2.3e-48 198.7 1321 24.4
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.0e-48 197.6 1109 26.1
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 8.6e-48 196.8 465 30.8
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 1.9e-47 195.7 1336 25.4
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 3.3e-47 194.9 1288 26.2
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.6e-46 191.4 531 30.3
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 1.0e-45 189.9 1113 25.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.8e-45 189.1 446 32.5
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 1.8e-45 189.1 1346 24.2
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 3.0e-45 188.3 1269 25.2
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 3.0e-45 188.3 273 43.2
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 5.2e-45 187.6 629 28.6
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 6.8e-45 187.2 1038 26.5
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 9.8e-44 183.3 397 35.3
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.3e-43 183.0 608 27.6
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.7e-43 181.4 477 31.4
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.1e-42 179.9 1299 24.9
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 1.1e-42 179.9 405 32.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.2e-42 176.8 307 39.1
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.6e-41 176.0 1227 24.7
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.3e-40 172.9 450 30.0
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.5e-39 169.5 467 30.2
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.9e-39 169.1 1227 25.4
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-37 162.9 620 28.1
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.2e-36 159.8 276 38.4
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.3e-35 156.4 408 31.4
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.2e-33 149.8 1256 23.2
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.5e-33 148.3 466 27.0
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 7.8e-33 147.1 1298 22.6
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.8e-29 136.0 1227 23.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.1e-29 135.2 435 26.7
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 1.2e-25 123.2 140 48.6
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 5.6e-23 114.4 357 28.0
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.8e-22 112.1 145 44.8
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 2.8e-22 112.1 267 39.7
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 6.0e-17 94.4 130 46.9
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.4e-13 83.2 121 41.3
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.4e-13 82.4 149 34.2
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.7e-11 76.3 329 31.6
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.9e-10 72.8 226 33.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-09 70.1 344 31.1
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.6e-08 64.3 258 30.6
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.5e-07 63.2 76 48.7
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.5e-07 63.2 94 42.6
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 2.5e-07 62.4 268 35.1
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 3.3e-07 62.0 84 40.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.3e-06 60.1 75 49.3


User provided reference genes

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