Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 7.9e-149 530.4 265 100.0
Aqoxy6G01275 Aquilegia oxysepala HOM05D000010 ORTHO05D009917 2.3e-15 87.0 69 66.7
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 5.1e-15 85.9 48 87.5
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 7.2e-09 65.5 49 67.3
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 7.2e-09 65.5 68 51.5
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.6e-08 63.2 49 65.3
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 3.6e-08 63.2 49 69.4
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.7e-08 62.8 49 67.3
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.7e-08 62.8 49 71.4
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.7e-08 62.8 49 71.4
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 4.7e-08 62.8 49 67.3
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 4.7e-08 62.8 49 65.3
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.9e-08 62.0 49 67.3
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.9e-08 62.0 49 67.3
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.9e-08 62.0 49 67.3
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 7.9e-08 62.0 49 65.3
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.0e-07 61.6 64 54.7
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.0e-07 61.6 49 63.3
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 1.4e-07 61.2 49 63.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.4e-07 61.2 49 63.3
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 1.8e-07 60.8 49 67.3
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.3e-07 60.5 49 63.3
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 65.3
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 57.1
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 65.3
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 63.3
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.0e-07 60.1 49 65.3
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 3.9e-07 59.7 49 65.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 3.9e-07 59.7 49 65.3
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 3.9e-07 59.7 49 65.3
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.9e-07 59.7 43 69.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.9e-07 59.7 49 63.3
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.9e-07 59.7 49 63.3
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 5.1e-07 59.3 49 63.3
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 5.1e-07 59.3 49 63.3
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 5.1e-07 59.3 49 63.3
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 5.1e-07 59.3 49 63.3
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 5.1e-07 59.3 49 63.3
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 6.7e-07 58.9 48 60.4
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 6.7e-07 58.9 49 63.3
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 6.7e-07 58.9 59 59.3
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 6.7e-07 58.9 48 60.4
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 6.7e-07 58.9 55 58.2
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 6.7e-07 58.9 49 61.2
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 6.7e-07 58.9 49 63.3
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 6.7e-07 58.9 49 61.2
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 8.8e-07 58.5 46 65.2
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 63.3
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 63.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 8.8e-07 58.5 47 63.8
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 61.2
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 63.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 63.3
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 8.8e-07 58.5 49 63.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.1e-06 58.2 49 61.2
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.1e-06 58.2 49 63.3
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.1e-06 58.2 49 63.3
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.5e-06 57.8 49 61.2
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.5e-06 57.8 49 63.3
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.5e-06 57.8 49 61.2
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.0e-06 57.4 49 61.2
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.0e-06 57.4 49 61.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 2.0e-06 57.4 49 61.2
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.6e-06 57.0 49 61.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.6e-06 57.0 43 67.4
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 2.6e-06 57.0 49 61.2
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.6e-06 57.0 49 61.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.6e-06 57.0 49 61.2
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 61.2
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 63.3
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.3e-06 56.6 49 61.2
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 59.2
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 59.2
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 55.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 61.2
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 55.1
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 59.2
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 61.2
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 4.4e-06 56.2 48 60.4
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 59.2
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 4.4e-06 56.2 72 43.1
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 4.4e-06 56.2 49 63.3
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 5.7e-06 55.8 48 58.3
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 5.7e-06 55.8 49 59.2
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 5.7e-06 55.8 49 59.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 5.7e-06 55.8 72 43.1
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 5.7e-06 55.8 49 57.1
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.4e-06 55.5 48 56.2
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 7.4e-06 55.5 43 67.4
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 9.7e-06 55.1 49 59.2
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.7e-06 55.1 71 45.1
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.7e-06 55.1 43 67.4
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 9.7e-06 55.1 49 55.1


User provided reference genes

Program Settings