Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03743 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 1.1e-229 799.7 424 100.0
Aqoxy3G02827 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 1.4e-155 553.5 408 80.4
Aqoxy3G01124 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 1.2e-50 204.9 434 40.1
TAR622G0154 Trochodendron aralioides HOM05D003680 ORTHO05D004264 5.5e-43 179.5 387 40.1
Haze_14726 Corylus avellana HOM05D003680 ORTHO05D004264 1.3e-36 158.3 384 39.3
Cfa007382 Carpinus fangiana HOM05D003680 ORTHO05D004264 1.4e-35 154.8 385 38.7
RcHm_v2.0_Chr2g0132111 Rosa chinensis HOM05D003680 ORTHO05D004264 1.2e-34 151.8 370 39.5
Dinv35099 Davidia involucrata HOM05D003680 ORTHO05D004264 2.1e-34 151.0 376 39.1
FAN02G4059 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.3e-33 147.5 394 37.8
MD17G1030000 Malus domestica HOM05D003680 ORTHO05D004264 1.1e-32 145.2 392 37.2
Prupe.3G290000 Prunus persica HOM05D003680 ORTHO05D004264 1.5e-32 144.8 370 39.5
Cc07_g01830 Coffea canephora HOM05D003680 ORTHO05D004264 3.3e-32 143.7 374 38.8
CiPaw.04G027800 Carya illinoinensis HOM05D003680 ORTHO05D004264 1.1e-30 138.7 367 38.4
CiPaw.03G042200 Carya illinoinensis HOM05D003680 ORTHO05D004264 3.1e-30 137.1 374 37.4
FvH4_4g26262 Fragaria vesca HOM05D003680 ORTHO05D004264 9.0e-30 135.6 388 36.1
FAN05G0183 Fragaria x ananassa HOM05D003680 ORTHO05D004264 9.0e-30 135.6 396 35.9
FAN12G0372 Fragaria x ananassa HOM05D003680 ORTHO05D004264 9.0e-30 135.6 388 36.1
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 9.0e-30 135.6 388 36.1
Sopen12g014830 Solanum pennellii HOM05D003680 ORTHO05D004264 1.0e-28 132.1 364 37.9
Gorai.007G076000 Gossypium raimondii HOM05D003680 ORTHO05D004264 1.3e-28 131.7 402 34.1
Thecc.04G015600 Theobroma cacao HOM05D003680 ORTHO05D004264 1.3e-28 131.7 365 35.9
CSS0043829 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 3.8e-28 130.2 389 33.9
Gohir.A11G066900 Gossypium hirsutum HOM05D003680 ORTHO05D004264 3.8e-28 130.2 413 33.9
MD09G1028500 Malus domestica HOM05D003680 ORTHO05D004264 5.0e-28 129.8 434 35.0
Oeu054618.2 Olea europaea HOM05D003680 ORTHO05D004264 5.0e-28 129.8 409 35.2
Sopen02g031250 Solanum pennellii HOM05D003680 ORTHO05D004264 6.5e-28 129.4 391 35.3
Gohir.D11G070800 Gossypium hirsutum HOM05D003680 ORTHO05D004264 3.2e-27 127.1 402 33.6
Manes.15G166300 Manihot esculenta HOM05D003680 ORTHO05D004264 3.2e-27 127.1 384 38.3
arahy.Tifrunner.gnm1.ann1.YJRC23 Arachis hypogaea HOM05D003680 ORTHO05D004264 5.5e-27 126.3 415 34.9
Prupe.1G550900 Prunus persica HOM05D003680 ORTHO05D004264 7.2e-27 125.9 439 32.6
Solyc02g086520.3 Solanum lycopersicum HOM05D003680 ORTHO05D004264 9.4e-27 125.6 380 35.0
Dinv38553 Davidia involucrata HOM05D003680 ORTHO05D004264 1.2e-26 125.2 377 35.0
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.6e-26 124.8 388 34.0
QL10p008427 Quercus lobata HOM05D003680 ORTHO05D004264 1.6e-26 124.8 353 36.0
Gorai.012G063600 Gossypium raimondii HOM05D003680 ORTHO05D004264 2.7e-26 124.0 372 36.0
MBI10_g00728_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 6.1e-26 122.9 396 34.1
Gohir.D04G056700 Gossypium hirsutum HOM05D003680 ORTHO05D004264 1.8e-25 121.3 372 35.5
Lj2g0009789 Lotus japonicus HOM05D003680 ORTHO05D004264 1.8e-25 121.3 397 34.0
PGR083G1310 Punica granatum HOM05D003680 ORTHO05D004264 1.8e-25 121.3 395 38.2
TWI36G0939 Tripterygium wilfordii HOM05D003680 ORTHO05D004264 1.8e-25 121.3 368 37.2
QL02p075129 Quercus lobata HOM05D003680 ORTHO05D004264 2.3e-25 120.9 180 46.1
arahy.Tifrunner.gnm1.ann1.WP4DQS Arachis hypogaea HOM05D003680 ORTHO05D004264 3.9e-25 120.2 400 34.0
CiPaw.12G029200 Carya illinoinensis HOM05D003680 ORTHO05D004264 3.9e-25 120.2 355 34.4
CANSAT64G1511 Cannabis sativa HOM05D003680 ORTHO05D004264 3.3e-24 117.1 423 33.3
Duzib147G1439 Durio zibethinus HOM05D003680 ORTHO05D004264 3.3e-24 117.1 383 34.7
Actinidia06002 Actinidia chinensis HOM05D003680 ORTHO05D004264 4.3e-24 116.7 403 32.8
Rhsim08G0175600 Rhododendron simsii HOM05D003680 ORTHO05D004264 4.3e-24 116.7 411 34.8
Solyc12g035240.2 Solanum lycopersicum HOM05D003680 ORTHO05D004264 9.7e-24 115.5 371 36.1
PSO478G2404 Papaver somniferum HOM05D003680 ORTHO05D004264 1.7e-23 114.8 392 33.7
PSO017G2107 Papaver somniferum HOM05D003680 ORTHO05D004264 2.2e-23 114.4 375 34.4
Eucgr.J02234 Eucalyptus grandis HOM05D003680 ORTHO05D004264 3.7e-23 113.6 163 46.6
Glyma.19G004100 Glycine max HOM05D003680 ORTHO05D004264 6.3e-23 112.8 194 43.8
MBI10_g00729_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 1.1e-22 112.1 373 33.2
Oeu057059.1 Olea europaea HOM05D003680 ORTHO05D004264 1.1e-22 112.1 362 33.7
Thecc.03G023400 Theobroma cacao HOM05D003680 ORTHO05D004264 1.1e-22 112.1 356 34.6
ATR1158G006 Amborella trichopoda HOM05D003680 ORTHO05D004264 1.4e-22 111.7 183 44.8
TAR374G0695 Trochodendron aralioides HOM05D003680 ORTHO05D004264 1.4e-22 111.7 384 33.9
Cfa019179 Carpinus fangiana HOM05D003680 ORTHO05D004264 4.1e-22 110.2 396 33.3
COL.COLO4_29093 Corchorus olitorius HOM05D003680 ORTHO05D004264 4.1e-22 110.2 190 43.7
RcHm_v2.0_Chr7g0192951 Rosa chinensis HOM05D003680 ORTHO05D004264 4.1e-22 110.2 368 34.5
Dinv33451 Davidia involucrata HOM05D003680 ORTHO05D004264 9.1e-22 109.0 365 34.2
Ca_04157_v3 Cicer arietinum L. HOM05D003680 ORTHO05D004264 1.5e-21 108.2 378 35.2
MD14G1175200 Malus domestica HOM05D003680 ORTHO05D004264 1.5e-21 108.2 349 36.1
PGSC0003DMG400028065 Solanum tuberosum HOM05D003680 ORTHO05D004264 2.0e-21 107.8 372 33.9
Ciclev10014743m.g Citrus clementina HOM05D003680 ORTHO05D004264 2.6e-21 107.5 396 32.1
CSS0037811 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 3.4e-21 107.1 379 32.2
Prupe.5G168500 Prunus persica HOM05D003680 ORTHO05D004264 3.4e-21 107.1 357 34.5
Nitab4.5_0000419g0090 Nicotiana tabacum HOM05D003680 ORTHO05D004264 5.9e-21 106.3 364 34.3
Ah.06g187080 Amaranthus hybridus HOM05D003680 ORTHO05D004264 1.0e-20 105.5 365 32.9
Nitab4.5_0001890g0010 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.0e-20 105.5 372 34.7
Potri.012G083200 Populus trichocarpa HOM05D003680 ORTHO05D004264 1.3e-20 105.1 414 33.1
CAN.G473.3 Capsicum annuum HOM05D003680 ORTHO05D004264 1.7e-20 104.8 335 36.1
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 1.7e-20 104.8 132 48.5
FAN04G1021 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.7e-20 104.8 367 33.5
Medtr6g004930 Medicago truncatula HOM05D003680 ORTHO05D004264 1.7e-20 104.8 386 32.1
Psat1g055600 Pisum sativum HOM05D003680 ORTHO05D004264 2.2e-20 104.4 186 39.2
CDE06G0754 Ceratophyllum demersum HOM05D003680 ORTHO05D000787 3.8e-20 103.6 186 41.4
FAN13G0261 Fragaria x ananassa HOM05D003680 ORTHO05D004264 3.8e-20 103.6 371 33.2
Rhsim08G0051500 Rhododendron simsii HOM05D003680 ORTHO05D000229 3.8e-20 103.6 202 41.6
Potri.001G348500 Populus trichocarpa HOM05D003680 ORTHO05D004264 5.0e-20 103.2 139 47.5
vmacro18275 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 5.0e-20 103.2 194 42.3
Gohir.A05G357400 Gossypium hirsutum HOM05D003680 ORTHO05D004264 1.4e-19 101.7 369 34.7
Oeu006814.2 Olea europaea HOM05D003680 ORTHO05D004264 1.4e-19 101.7 359 34.3
vmacro23077 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 1.4e-19 101.7 382 31.2
GSVIVG01032424001 Vitis vinifera HOM05D003680 ORTHO05D004264 1.9e-19 101.3 367 36.0
PGSC0003DMG400012598 Solanum tuberosum HOM05D003680 ORTHO05D004264 3.2e-19 100.5 387 32.0
DCAR_021716 Daucus carota HOM05D003680 ORTHO05D004264 7.2e-19 99.4 383 31.3
MD06G1169700 Malus domestica HOM05D003680 ORTHO05D004264 7.2e-19 99.4 312 33.3
VMungo0464G0243 Vigna mungo HOM05D003680 ORTHO05D004264 9.4e-19 99.0 241 38.6
Lj7A598G52 Lonicera japonica HOM05D003680 ORTHO05D004264 1.6e-18 98.2 143 45.5
Haze_07557 Corylus avellana HOM05D003680 ORTHO05D004264 2.1e-18 97.8 383 35.0
FAN08G0581 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.1e-18 97.8 370 32.4
Ciclev10019708m.g Citrus clementina HOM05D003680 ORTHO05D004264 2.7e-18 97.4 381 31.5
TPR.G14068 Trifolium pratense HOM05D003680 ORTHO05D004264 2.7e-18 97.4 185 41.1
Zm00001eb122990 Zea mays HOM05D003680 ORTHO05D004264 2.7e-18 97.4 186 41.9
AUR62043212 Chenopodium quinoa HOM05D003680 ORTHO05D004264 3.6e-18 97.1 377 30.8
vmacro19321 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 4.7e-18 96.7 380 30.8
MSTRG.3151 Avicennia marina HOM05D003680 ORTHO05D004264 6.1e-18 96.3 388 32.0
FvH4_5g05870 Fragaria vesca HOM05D003680 ORTHO05D004264 1.4e-17 95.1 377 32.4
Thhalv10020517m.g Eutrema salsugineum HOM05D003680 ORTHO05D004264 2.3e-17 94.4 436 30.7
Nitab4.5_0002682g0050 Nicotiana tabacum HOM05D003680 ORTHO05D004264 2.3e-17 94.4 399 30.3
Aa31LG5G10720 Aethionema arabicum HOM05D003680 ORTHO05D004264 3.9e-17 93.6 146 43.2
Actinidia19347 Actinidia chinensis HOM05D003680 ORTHO05D004264 5.1e-17 93.2 360 33.1
Sc03g0007570 Simmondsia chinensis HOM05D003680 ORTHO05D004264 5.1e-17 93.2 186 40.3
FAN25G3522 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.1e-16 92.0 123 46.3
Glyma.05G004000 Glycine max HOM05D003680 ORTHO05D004264 1.1e-16 92.0 195 37.9
Lalb_Chr06g0175821 Lupinus albus HOM05D003680 ORTHO05D004264 1.1e-16 92.0 388 33.0
Manes.06G108400 Manihot esculenta HOM05D003680 ORTHO05D004264 1.1e-16 92.0 386 31.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.0e-16 91.3 391 31.2
MSTRG.3150 Avicennia marina HOM05D003680 ORTHO05D004264 4.4e-16 90.1 388 32.0
EL10Ac4g08567 Beta vulgaris HOM05D003680 ORTHO05D004264 9.7e-16 89.0 397 31.0
Peaxi162Scf00129g01425 Petunia axillaris HOM05D003680 ORTHO05D004264 1.3e-15 88.6 227 37.4
CSS0042153 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 1.7e-15 88.2 400 31.2
ECA246G0141 Erigeron canadensis HOM05D003680 ORTHO05D004264 3.7e-15 87.0 389 31.4
Phvul.004G007500 Phaseolus vulgaris HOM05D003680 ORTHO05D004264 3.7e-15 87.0 281 33.1
Zm00001eb336590 Zea mays HOM05D003680 ORTHO05D004264 4.8e-15 86.7 191 36.1
Carub.0006s1272 Capsella rubella HOM05D003680 ORTHO05D004264 6.3e-15 86.3 163 39.3
Potri.T125008 Populus trichocarpa HOM05D003680 ORTHO05D004264 6.3e-15 86.3 407 30.7
FAN14G2184 Fragaria x ananassa HOM05D003680 ORTHO05D004264 8.2e-15 85.9 344 34.0
Nitab4.5_0006802g0060 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.1e-14 85.5 386 30.3
Sc12g0005110 Simmondsia chinensis HOM05D003680 ORTHO05D004264 1.1e-14 85.5 384 29.9
CARHR198770 Cardamine hirsuta HOM05D003680 ORTHO05D004264 1.4e-14 85.1 134 41.8
HanXRQChr16g0504641 Helianthus annuus HOM05D003680 ORTHO05D004264 1.8e-14 84.7 84 50.0
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 1.8e-14 84.7 405 30.6
AT3G01560 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 2.4e-14 84.3 157 41.4
Lsat_1_v5_gn_4_76320 Lactuca sativa HOM05D003680 ORTHO05D004264 3.1e-14 84.0 209 33.5
Actinidia35765 Actinidia chinensis HOM05D003680 ORTHO05D004264 7.0e-14 82.8 370 30.8
Lj9P445T42 Lonicera japonica HOM05D003680 ORTHO05D004264 1.2e-13 82.0 128 42.2
Pp3c11_23810 Physcomitrium patens HOM05D003680 ORTHO05D004264 1.5e-13 81.6 102 46.1
Aa31LG11G15310 Aethionema arabicum HOM05D003680 ORTHO05D004264 2.6e-13 80.9 156 41.0
Os05g0169400 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 2.6e-13 80.9 113 46.0
CARHR075340 Cardamine hirsuta HOM05D003680 ORTHO05D004264 4.5e-13 80.1 93 49.5
COL.COLO4_30132 Corchorus olitorius HOM05D000527 ORTHO05D000559 4.5e-13 80.1 375 27.5
FvH4_6g28150 Fragaria vesca HOM05D003680 ORTHO05D004264 1.0e-12 79.0 382 31.9
Sabra12G0059900 Salix brachista HOM05D003680 ORTHO05D004264 1.3e-12 78.6 423 29.6
AL3G10590 Arabidopsis lyrata HOM05D003680 ORTHO05D004264 1.7e-12 78.2 365 29.9
HanXRQChr17g0548551 Helianthus annuus HOM05D003680 ORTHO05D004264 2.9e-12 77.4 383 30.3
C02p07090 Brassica napus HOM05D003680 ORTHO05D004264 5.0e-12 76.6 130 40.0
Lsat_1_v5_gn_0_32160 Lactuca sativa HOM05D003680 ORTHO05D004264 5.0e-12 76.6 176 38.1
CANSAT80G2707 Cannabis sativa HOM05D003680 ORTHO05D004264 6.5e-12 76.3 422 27.5
Mapoly0092s0027 Marchantia polymorpha HOM05D003680 ORTHO05D004264 6.5e-12 76.3 201 36.3
Sabra16G0228100 Salix brachista HOM05D003680 ORTHO05D004264 8.5e-12 75.9 369 27.6
THA.LOC104822398 Tarenaya hassleriana HOM05D003680 ORTHO05D004264 8.5e-12 75.9 362 32.6
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.1e-11 75.5 469 26.4
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.5e-11 75.1 469 26.4
BcaNung03147 Brassica carinata HOM05D003680 ORTHO05D004264 2.5e-11 74.3 169 37.3
SEGI_20908 Sequoiadendron giganteum HOM05D003680 ORTHO05D004264 3.2e-11 73.9 412 30.8
Manes.15G166200 Manihot esculenta HOM05D003680 ORTHO05D004264 4.2e-11 73.6 393 32.8
SMO266G0040 Selaginella moellendorffii HOM05D003680 ORTHO05D004264 1.2e-10 72.0 75 54.7
Migut.H00085 Erythranthe guttata HOM05D003680 ORTHO05D004264 2.7e-10 70.9 380 29.5
Sp3g00490 Schrenkiella parvula HOM05D003680 ORTHO05D004264 4.7e-10 70.1 344 31.7
Hund02282 Selenicereus undatus HOM05D003680 ORTHO05D004264 1.0e-09 68.9 366 32.2
Os01g0169900 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 1.8e-09 68.2 402 35.1
ECA232G2741 Erigeron canadensis HOM05D003680 ORTHO05D004264 3.0e-09 67.4 215 32.6
Cpa.g.sc108.54 Carica papaya HOM05D003680 ORTHO05D004264 3.9e-09 67.0 385 29.6
AT5G14540 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 6.7e-09 66.2 358 30.2
Atru.chr9.2544 Acer truncatum HOM05D003680 ORTHO05D004264 1.1e-08 65.5 54 57.4
CDE07G1653 Ceratophyllum demersum HOM05D003680 ORTHO05D004264 1.5e-08 65.1 367 28.9
GSVIVG01007680001 Vitis vinifera HOM05D003680 ORTHO05D004264 3.3e-08 63.9 368 31.2
Pp3c8_19720 Physcomitrium patens HOM05D003680 ORTHO05D004264 5.7e-08 63.2 238 31.9
PGR044G1290 Punica granatum HOM05D003680 ORTHO05D004264 5.7e-08 63.2 367 30.0
Eucgr.K02812 Eucalyptus grandis HOM05D003680 ORTHO05D004264 1.3e-07 62.0 440 27.7
Pp3c24_13440 Physcomitrium patens HOM05D003680 ORTHO05D004264 1.3e-07 62.0 255 32.9
ECA246G4686 Erigeron canadensis HOM05D000527 ORTHO05D000559 3.1e-06 57.4 33 81.8
Manes.06G108300 Manihot esculenta HOM05D000527 ORTHO05D000559 5.3e-06 56.6 31 83.9
PGSC0003DMG400018109 Solanum tuberosum HOM05D000527 ORTHO05D000559 5.3e-06 56.6 56 50.0
TWI39G0007 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 5.3e-06 56.6 62 54.8
MD06G1169800 Malus domestica HOM05D000527 ORTHO05D000559 9.1e-06 55.8 33 75.8


User provided reference genes

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