Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 3.2e-198 694.9 353 100.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.5e-134 482.6 344 74.1
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.3e-134 482.3 345 73.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.3e-132 476.1 345 72.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.2e-131 473.8 347 70.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.6e-128 461.8 344 70.3
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.7e-127 459.9 344 69.5
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.7e-127 459.9 344 70.6
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.9e-127 458.8 349 68.2
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 9.6e-126 454.1 344 69.2
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 9.9e-123 444.1 340 69.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 8.4e-122 441.0 341 68.6
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 3.2e-121 439.1 348 66.4
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-121 439.1 344 67.4
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.2e-121 439.1 344 66.9
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 5.4e-121 438.3 344 66.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 3.5e-120 435.6 347 67.4
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-119 434.1 354 67.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.7e-119 433.3 347 64.8
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.9e-119 432.2 352 66.5
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.5e-118 430.3 345 66.7
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.5e-118 430.3 346 66.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-118 430.3 346 68.5
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.3e-118 429.1 344 64.8
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.6e-118 428.3 346 66.2
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.6e-118 427.6 344 65.7
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.3e-117 427.2 346 65.9
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.1e-117 426.4 349 65.0
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.8e-117 425.2 344 66.3
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-116 421.4 344 65.7
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 9.0e-116 421.0 348 65.5
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 2.0e-115 419.9 413 56.9
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.6e-115 419.5 333 67.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 5.8e-115 418.3 345 64.6
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 7.6e-115 417.9 346 65.6
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.3e-114 417.2 344 64.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 6.4e-114 414.8 347 66.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.4e-113 413.7 408 56.1
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 5.4e-113 411.8 347 63.7
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 7.1e-113 411.4 344 63.4
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.1e-112 409.8 341 65.4
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-112 409.5 341 65.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.6e-112 408.7 341 65.1
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.3e-111 406.4 344 63.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.3e-109 400.6 349 62.8
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 3.6e-109 399.1 344 63.7
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 8.1e-109 397.9 342 64.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.1e-108 396.0 341 63.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.3e-108 395.2 331 61.9
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 5.3e-108 395.2 341 61.9
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.2e-107 394.0 343 63.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.0e-107 393.3 347 62.2
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 3.4e-107 392.5 339 61.4
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 4.5e-107 392.1 345 61.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 9.9e-107 391.0 341 61.0
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-106 390.6 341 63.0
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.2e-106 389.8 345 60.6
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.9e-106 389.4 348 61.8
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 4.9e-106 388.7 345 60.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 6.4e-106 388.3 345 60.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.4e-105 387.1 346 61.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.4e-105 386.3 358 62.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.2e-105 386.0 341 62.5
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.6e-104 383.6 345 62.6
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.6e-104 383.6 406 54.4
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.7e-104 382.9 345 62.6
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 6.0e-104 381.7 348 61.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-103 380.9 342 61.7
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.8e-103 380.2 345 60.9
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 3.0e-103 379.4 344 60.8
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.0e-103 379.4 344 59.9
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.1e-102 377.5 345 61.7
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.5e-102 377.1 350 61.1
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 7.4e-102 374.8 347 62.0
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 9.6e-102 374.4 344 61.6
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 1.3e-101 374.0 345 59.7
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.6e-101 373.6 296 67.6
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.6e-101 373.6 345 59.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.8e-101 372.9 344 59.9
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-101 372.5 344 60.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.2e-101 371.7 388 55.7
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.1e-100 370.9 345 60.0
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.2e-99 367.5 347 59.9
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 2.6e-99 366.3 343 60.9
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.6e-99 366.3 343 59.2
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.4e-99 365.9 344 59.3
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.5e-99 365.5 346 60.4
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.7e-98 363.6 325 60.9
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.7e-98 363.6 348 59.8
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.7e-98 363.6 347 58.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.9e-98 362.8 346 58.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.9e-98 362.8 345 60.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.4e-97 360.5 347 57.9
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.5e-97 359.8 347 60.2
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 7.1e-97 358.2 352 57.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.7e-96 356.3 344 58.4
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.7e-96 356.3 347 57.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.3e-95 353.2 344 59.3
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.3e-95 353.2 343 57.7
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.3e-95 353.2 343 58.3
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.0e-95 352.8 347 58.5
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 8.7e-95 351.3 346 58.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 8.7e-95 351.3 345 58.8
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.5e-94 349.7 344 57.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 3.3e-94 349.4 334 57.5
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.3e-94 349.0 343 55.1
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 5.7e-94 348.6 344 58.1
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.6e-93 347.1 344 57.8
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 4.8e-93 345.5 346 58.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 4.8e-93 345.5 332 61.4
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-92 344.4 354 53.7
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.8e-92 343.6 346 56.6
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 9.0e-92 341.3 333 55.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.0e-91 340.1 349 57.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 8.5e-90 334.7 346 57.2
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.5e-90 334.7 278 64.4
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 2.5e-89 333.2 344 57.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.2e-88 330.9 343 57.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-88 330.5 345 56.5
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.6e-88 330.5 343 57.1
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.6e-88 330.5 345 56.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 7.9e-88 328.2 347 55.9
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-87 326.6 346 55.8
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 3.9e-87 325.9 346 55.5
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.9e-87 325.9 346 55.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 8.7e-87 324.7 347 56.5
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.5e-86 323.9 349 52.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.5e-86 323.9 343 55.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 3.3e-86 322.8 343 56.0
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 9.7e-86 321.2 346 52.0
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.8e-85 319.7 320 58.4
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.8e-85 319.7 348 54.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 4.8e-85 318.9 343 54.8
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 4.8e-85 318.9 343 54.8
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.8e-84 317.0 345 52.2
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.8e-84 317.0 261 65.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.1e-84 316.2 343 54.8
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.1e-84 316.2 350 54.3
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.9e-82 309.7 275 64.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.2e-77 293.5 244 65.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.0e-74 284.6 277 61.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 5.9e-67 258.8 339 48.1
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.2e-65 253.1 342 49.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.7e-64 250.0 206 66.5
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.0e-59 233.8 255 51.4
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 6.1e-48 195.7 342 42.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.0e-46 190.7 348 37.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.1e-41 174.9 394 34.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.3e-34 150.6 255 39.6
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 3.0e-26 123.6 152 51.3
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.0e-26 122.9 157 47.1
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.1e-20 105.1 235 34.5
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.9e-20 104.4 152 42.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.9e-17 94.4 103 52.4
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 6.4e-13 79.3 173 35.8
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.7e-10 71.2 186 31.2
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.5e-09 68.2 191 34.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.8e-07 61.2 350 24.0
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 1.2e-06 58.5 252 23.8
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 4.4e-06 56.6 332 23.8
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 9.9e-06 55.5 252 23.4


User provided reference genes

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