Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 4.4e-161 571.2 289 100.0
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 6.0e-142 507.7 304 86.2
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.5e-129 466.5 304 79.6
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.3e-125 453.4 304 77.6
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 3.0e-125 452.2 304 77.0
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 6.6e-125 451.1 304 77.3
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.1e-124 450.3 304 76.3
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 3.3e-124 448.7 304 77.6
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 4.3e-124 448.4 304 76.6
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.4e-122 443.4 305 76.1
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.4e-122 443.4 305 76.1
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.4e-122 443.4 305 76.1
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 2.4e-122 442.6 304 76.6
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 2.4e-122 442.6 304 75.7
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 2.4e-122 442.6 304 75.7
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 4.0e-122 441.8 303 76.2
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 4.0e-122 441.8 303 76.2
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 5.3e-122 441.4 304 75.3
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 9.0e-122 440.7 304 75.7
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 9.0e-122 440.7 304 75.3
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.2e-121 440.3 304 75.0
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 1.2e-121 440.3 309 75.4
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.5e-121 439.9 304 75.0
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 2.0e-121 439.5 304 76.0
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 2.0e-121 439.5 304 76.3
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 2.0e-121 439.5 303 75.9
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 2.0e-121 439.5 304 75.3
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.4e-121 438.7 304 74.7
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 3.4e-121 438.7 304 75.0
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 4.4e-121 438.3 304 74.7
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 4.4e-121 438.3 304 75.0
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 4.4e-121 438.3 304 74.3
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 5.8e-121 438.0 304 75.0
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.8e-121 438.0 304 75.3
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 7.6e-121 437.6 304 75.3
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.3e-120 436.8 304 74.7
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 1.3e-120 436.8 304 74.7
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.3e-120 436.8 304 75.3
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.7e-120 436.4 304 74.7
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.2e-120 436.0 304 75.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.2e-120 436.0 304 75.3
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.9e-120 435.6 304 75.0
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 2.9e-120 435.6 304 75.3
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 2.9e-120 435.6 303 74.6
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 4.9e-120 434.9 304 74.7
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 6.4e-120 434.5 304 75.7
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 6.4e-120 434.5 304 74.7
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 6.4e-120 434.5 304 74.7
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 8.4e-120 434.1 304 75.3
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 8.4e-120 434.1 304 75.3
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.4e-119 433.3 303 74.3
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.4e-119 433.3 303 73.9
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.4e-119 433.3 304 75.0
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.9e-119 433.0 304 75.7
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.9e-119 433.0 304 75.7
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 2.4e-119 432.6 304 75.3
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 2.4e-119 432.6 304 74.7
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.4e-119 432.6 304 74.0
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 3.2e-119 432.2 304 74.3
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 3.2e-119 432.2 304 74.3
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 4.2e-119 431.8 304 74.0
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 4.2e-119 431.8 303 74.6
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 5.4e-119 431.4 304 74.3
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 5.4e-119 431.4 302 74.5
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.4e-119 431.4 304 75.0
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 5.4e-119 431.4 304 74.0
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 7.1e-119 431.0 304 74.0
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 7.1e-119 431.0 304 75.0
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 7.1e-119 431.0 304 73.7
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 9.3e-119 430.6 304 75.0
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 9.3e-119 430.6 303 74.6
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 9.3e-119 430.6 303 73.9
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 1.2e-118 430.3 303 73.6
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.2e-118 430.3 304 74.3
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.6e-118 429.9 304 74.3
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.6e-118 429.9 304 74.3
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 2.1e-118 429.5 304 75.0
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 2.1e-118 429.5 304 75.0
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.7e-118 429.1 304 75.0
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 2.7e-118 429.1 304 74.7
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 3.5e-118 428.7 304 74.0
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 3.5e-118 428.7 304 73.7
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 3.5e-118 428.7 304 72.7
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.6e-118 428.3 303 75.2
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 6.0e-118 427.9 304 75.0
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 7.8e-118 427.6 303 73.9
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 7.8e-118 427.6 304 73.4
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 7.8e-118 427.6 304 72.7
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 1.0e-117 427.2 303 73.9
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 1.0e-117 427.2 304 72.4
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.3e-117 426.8 304 73.7
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 3.9e-117 425.2 304 73.4
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 3.9e-117 425.2 303 73.6
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 5.1e-117 424.9 303 73.3
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.1e-116 423.7 304 73.0
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.9e-116 422.9 304 72.0
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 2.5e-116 422.5 339 68.4
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 3.3e-116 422.2 310 71.6
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 1.3e-115 420.2 341 66.6
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 1.6e-115 419.9 304 73.4
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.1e-115 419.5 304 72.4
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 4.8e-115 418.3 303 72.9
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 8.1e-115 417.5 304 73.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 8.1e-115 417.5 378 61.6
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 1.4e-114 416.8 304 72.0
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.8e-114 416.4 304 72.7
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 2.4e-114 416.0 304 72.7
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 2.4e-114 416.0 304 72.7
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 2.4e-114 416.0 304 72.7
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 3.1e-114 415.6 303 72.3
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 4.0e-114 415.2 304 72.4
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 5.3e-114 414.8 388 60.3
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.2e-113 413.7 303 71.3
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 2.6e-113 412.5 303 71.6
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 5.8e-113 411.4 304 71.1
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 9.9e-113 410.6 303 71.9
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 9.9e-113 410.6 303 71.9
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 9.9e-113 410.6 303 71.9
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 2.2e-112 409.5 303 71.9
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 3.8e-112 408.7 303 71.6
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 3.8e-112 408.7 303 71.6
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 7.1e-111 404.4 352 63.9
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.2e-110 403.7 304 69.1
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 2.5e-108 396.0 304 67.8
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 4.3e-108 395.2 305 68.5
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 2.8e-107 392.5 303 68.3
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 4.9e-104 381.7 306 66.3
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.9e-103 379.8 306 67.0
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 2.7e-102 375.9 304 65.8
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 4.6e-102 375.2 303 66.0
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.5e-100 370.2 269 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.1e-98 364.0 305 63.0
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 9.3e-95 350.9 277 69.7
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.7e-94 349.4 263 70.3
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 6.7e-93 344.7 228 81.1
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.8e-91 339.3 303 64.0
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 4.8e-91 338.6 304 62.8
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 8.8e-85 317.8 259 68.0
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 2.8e-83 312.8 288 59.4
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 3.7e-83 312.4 304 58.9
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.4e-82 310.5 262 66.4
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.1e-79 300.8 316 55.7
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 1.2e-73 280.8 331 48.0
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 5.9e-73 278.5 222 69.8
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 7.7e-73 278.1 329 48.3
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 8.5e-72 274.6 230 67.4
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 8.0e-70 268.1 309 48.9
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 8.5e-56 221.5 379 37.2
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 2.1e-54 216.9 151 76.8
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 8.0e-54 214.9 151 75.5
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.0e-53 214.5 151 75.5
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 2.7e-41 173.3 98 85.7
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.0e-40 171.4 288 42.7
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.3e-39 166.4 151 62.9
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 4.4e-36 156.0 100 77.0
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 7.5e-36 155.2 245 45.3
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 7.3e-31 138.7 90 73.3
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.3e-29 133.7 90 70.0
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 6.8e-29 132.1 90 68.9
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 6.4e-27 125.6 74 83.8
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 1.2e-22 111.3 84 66.7
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 1.2e-22 111.3 84 66.7
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.2e-18 96.7 59 83.1
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 1.2e-17 94.7 90 58.9
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 4.0e-13 79.7 52 69.2
Cpa.g.c45131 Carica papaya HOM05D003693 ORTHO05D004698 2.4e-10 70.5 35 88.6
EL10As4g23424 Beta vulgaris HOM05D003693 ORTHO05D088905 3.5e-09 66.6 73 49.3
Lsat_1_v5_gn_3_99160 Lactuca sativa HOM05D003693 ORTHO05D231443 1.3e-06 58.2 61 50.8
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 3.6e-06 56.6 172 29.7


User provided reference genes

Program Settings