Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 6.1e-160 567.4 277 100.0
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.1e-119 432.2 277 75.1
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.6e-118 429.1 277 76.2
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.7e-114 416.4 276 72.5
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.5e-113 413.3 277 71.8
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.9e-113 412.9 276 72.1
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.2e-112 410.2 277 71.5
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.1e-112 409.5 277 70.8
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.4e-111 406.8 277 71.5
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.4e-111 406.8 278 71.2
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 4.0e-111 405.2 277 69.3
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.2e-110 403.7 240 80.4
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 2.6e-110 402.5 273 72.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 4.4e-110 401.7 279 71.3
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 4.4e-110 401.7 280 69.6
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.2e-109 399.4 280 69.6
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 3.7e-109 398.7 279 71.0
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 3.7e-109 398.7 277 69.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 6.4e-109 397.9 277 69.0
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.1e-108 397.1 276 71.7
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.9e-108 396.4 277 69.7
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 2.4e-108 396.0 279 69.5
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.2e-108 395.6 273 70.0
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.1e-108 395.2 277 67.9
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.1e-108 395.2 277 67.5
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.6e-107 393.3 277 68.6
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 2.1e-107 392.9 277 66.4
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 3.5e-107 392.1 277 67.9
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 7.8e-107 391.0 277 66.1
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.0e-106 390.6 279 66.3
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.0e-106 390.6 277 68.6
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.0e-106 390.6 277 67.5
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.3e-106 390.2 280 68.6
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.3e-106 389.4 279 68.1
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.3e-106 389.4 277 70.4
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.3e-106 389.4 277 69.0
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 3.9e-106 388.7 277 69.0
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 6.6e-106 387.9 277 70.0
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 6.6e-106 387.9 277 66.4
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 8.6e-106 387.5 277 69.3
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.1e-105 387.1 277 65.3
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.9e-105 386.3 277 67.5
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.9e-105 386.3 277 68.2
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 2.5e-105 386.0 280 68.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.5e-105 386.0 277 69.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.5e-105 386.0 277 67.9
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.3e-105 385.2 277 66.4
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.6e-105 384.8 277 64.6
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 7.3e-105 384.4 278 69.1
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 7.3e-105 384.4 277 68.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.6e-104 383.3 277 67.5
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-104 383.3 278 68.3
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.1e-104 382.9 279 68.5
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 2.1e-104 382.9 283 69.3
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.8e-104 382.5 275 68.0
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 2.8e-104 382.5 278 67.3
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.7e-104 381.7 278 68.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 6.2e-104 381.3 277 67.1
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.4e-103 380.2 277 66.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.8e-103 379.8 280 66.1
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.8e-103 379.8 277 66.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 4.0e-103 378.6 279 67.7
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.2e-103 378.3 280 65.7
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 8.9e-103 377.5 279 67.4
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.2e-102 377.1 296 61.5
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.5e-102 376.7 279 65.2
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 3.4e-102 375.6 284 66.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 3.4e-102 375.6 277 65.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 4.4e-102 375.2 277 66.4
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 5.8e-102 374.8 309 62.1
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.8e-102 374.8 279 66.3
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 9.9e-102 374.0 277 65.3
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.7e-101 373.2 277 65.3
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 63.9
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.2e-101 372.9 236 77.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 66.8
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.7e-101 372.1 285 62.8
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.7e-101 372.1 286 64.3
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 4.9e-101 371.7 234 75.2
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 8.4e-101 370.9 273 65.6
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.1e-100 370.5 277 65.3
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 2.4e-100 369.4 279 68.5
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 2.4e-100 369.4 280 65.0
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.1e-100 368.6 278 66.5
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.2e-99 367.1 278 65.8
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.6e-99 366.7 277 63.9
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 2.1e-99 366.3 285 62.8
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.1e-99 366.3 277 65.0
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.5e-99 365.5 278 66.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 6.0e-99 364.8 285 62.5
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 6.0e-99 364.8 276 64.1
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 7.8e-99 364.4 278 63.7
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.0e-98 364.0 287 62.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.0e-98 364.0 278 65.8
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.7e-98 363.2 285 62.1
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.3e-98 362.8 241 71.0
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.3e-98 362.8 285 62.1
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.0e-98 362.5 286 62.2
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 5.1e-98 361.7 285 62.1
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 5.1e-98 361.7 285 62.1
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 5.1e-98 361.7 286 61.2
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 5.1e-98 361.7 275 64.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 6.6e-98 361.3 285 61.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 8.6e-98 360.9 285 62.1
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-97 360.5 285 62.1
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-97 360.5 285 61.8
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.1e-97 360.5 285 61.8
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.9e-97 359.8 285 62.1
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 3.3e-97 359.0 282 63.8
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 4.3e-97 358.6 288 60.4
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 4.3e-97 358.6 288 60.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 4.3e-97 358.6 285 61.8
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.2e-96 357.1 278 62.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.1e-96 356.3 286 61.2
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.8e-96 355.9 286 61.2
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 8.1e-96 354.4 286 59.8
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 8.1e-96 354.4 273 61.2
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.1e-95 354.0 279 62.4
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.4e-95 353.6 286 60.5
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 3.1e-95 352.4 288 60.4
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 3.1e-95 352.4 286 59.8
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 5.2e-95 351.7 288 60.8
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 5.2e-95 351.7 288 60.8
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 5.2e-95 351.7 279 62.0
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 6.8e-95 351.3 235 70.6
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 6.8e-95 351.3 278 61.5
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 8.9e-95 350.9 274 63.1
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.2e-94 350.5 277 62.1
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.4e-94 349.0 288 59.4
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 3.4e-94 349.0 288 60.1
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.4e-94 349.0 288 59.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 7.6e-94 347.8 279 60.2
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 7.6e-94 347.8 279 60.2
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.4e-92 343.6 277 60.3
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 3.2e-92 342.4 277 59.2
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 4.6e-91 338.6 278 60.8
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.0e-90 337.4 278 61.5
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 2.4e-87 326.2 279 58.8
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.6e-86 322.8 279 55.2
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.3e-85 320.5 248 63.3
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.8e-85 318.9 278 58.6
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.9e-84 316.6 278 58.3
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 3.3e-81 305.8 256 58.2
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.4e-81 304.7 236 65.3
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.0e-79 298.9 263 54.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 5.8e-78 295.0 278 52.2
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 2.2e-77 293.1 289 50.2
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.0e-75 285.0 185 73.0
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.5e-70 270.4 198 64.1
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 3.4e-70 269.2 274 46.7
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 3.4e-70 269.2 235 55.7
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.6e-64 250.4 235 48.1
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 6.9e-63 245.0 183 66.1
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 5.0e-61 238.8 186 61.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 6.1e-59 231.9 159 71.1
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.9e-58 229.2 165 71.5
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 6.7e-58 228.4 283 39.9
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.5e-52 209.9 160 63.1
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.9e-51 204.9 246 45.5
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.1e-47 193.0 178 57.9
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.9e-45 186.4 216 44.9
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.2e-40 170.2 236 37.3
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 3.1e-39 166.4 140 61.4
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 4.1e-39 166.0 140 61.4
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 4.1e-39 166.0 140 61.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-25 120.9 117 53.0
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.8e-24 115.9 184 39.7
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-23 114.0 119 45.4
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.7e-17 92.4 74 55.4


User provided reference genes

Program Settings